JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP6V1FNB_chr7_128861330_128877047	1/1	a0001	176	428	91	73	199	15	48	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	a0002	28	4	0	0	4	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	a0003	176	2	2	0	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	a0004	176	2	0	0	2	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	a0005	176	2	0	0	0	1	1	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	a0006	176	1	0	0	1	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	a0007	176	1	0	1	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	a0008	176	1	1	0	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	a0009	176	1	0	0	0	0	1	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1F_chr7_128857856_128870847	1/1	a0001	119	438	93	77	198	18	50	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	a0002	119	3	3	0	0	0	0	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	a0003	119	1	0	1	0	0	0	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1G1_chr9_114582769_114603879	1/1	a0001	118	410	89	73	188	16	42	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	a0002	118	8	7	1	0	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	a0003	117	2	0	0	2	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G2_chr6_31539444_31551608	0/1	a0001	118	432	94	80	197	16	44	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	a0002	118	2	0	2	0	0	0	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	a0003	118	1	0	0	1	0	0	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G3_chr1_198518222_198545680	0/1	a0001	118	389	77	75	178	18	40	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	a0002	118	14	13	1	0	0	0	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	a0003	118	2	2	0	0	0	0	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1H_chr8_53710543_53848245	1/1	a0001	483	284	78	44	130	8	22	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	a0002	483	1	0	0	0	0	1	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	a0003	483	1	0	0	0	0	1	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP7A_chrX_77905693_78055395	1/1	a0001	1500	139	33	17	65	5	17	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0002	1500	73	15	13	35	2	8	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0003	1500	5	0	0	5	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0004	1500	5	3	2	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0005	1500	2	2	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0006	1500	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0007	1500	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0008	1500	1	0	1	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0009	863	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0010	1500	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0011	1500	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0012	1187	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0013	964	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	a0014	1500	1	0	0	0	0	1	copy fasta	ATP7A	chrX	77905693	78055395
ATP7B_chr13_51927669_52016450	1/1	a0001	1465	113	31	25	33	3	19	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0002	1465	84	13	22	31	3	15	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0003	1465	59	33	9	10	1	6	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0004	1465	12	1	0	11	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0005	1465	11	4	7	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0006	1465	4	0	0	4	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0007	1465	4	3	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0008	1465	4	3	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0009	1465	2	1	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0010	1465	1	0	0	0	1	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0011	1465	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0012	1465	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450