JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEMA6D_chr15_47712505_47779228	0/0	a0005	1073	2	2	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	a0006	1073	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	a0007	1073	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	a0008	1073	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA7A_chr15_74404289_74438958	1/1	a0001	666	390	78	73	179	15	43	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	a0002	666	9	9	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	a0003	666	1	0	0	1	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	a0004	666	1	0	0	0	1	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	a0005	666	1	0	1	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	a0006	666	1	1	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	a0007	666	1	0	0	0	0	1	copy fasta	SEMA7A	chr15	74404289	74438958
SEMG1_chr20_45202033_45214768	1/1	a0001	462	270	27	45	153	10	33	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0002	462	105	51	27	22	2	3	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0003	402	10	1	4	1	2	2	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0004	462	6	0	4	2	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0005	462	5	5	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0006	462	2	1	1	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0007	462	1	1	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0008	233	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0009	462	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0010	462	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0011	462	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0012	462	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0013	462	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0014	462	1	1	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0015	456	1	0	1	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	a0016	462	1	1	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG2_chr20_45216373_45229458	1/1	a0001	582	266	57	53	114	11	29	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0002	582	46	13	15	16	0	2	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0003	582	29	8	8	7	2	4	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0004	582	11	11	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0005	582	4	4	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0006	582	1	1	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0007	474	1	1	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0008	582	1	0	0	0	1	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0009	582	1	0	0	0	0	1	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0010	582	1	1	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	a0011	582	1	0	0	1	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SENP1_chr12_48037897_48111079	1/1	a0001	644	389	95	69	171	14	38	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	a0002	644	2	0	0	2	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	a0003	644	1	0	0	1	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	a0004	644	1	0	1	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	a0005	644	1	1	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP2_chr3_185581295_185638551	1/1	a0001	589	213	43	49	87	10	22	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	a0002	589	145	42	27	52	4	20	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	a0003	589	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	a0004	589	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP3_chr17_7556919_7576969	1/1	a0001	574	442	91	82	206	18	43	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	a0002	574	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	a0003	574	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969