JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SENP3_chr17_7556919_7576969	0/0	a0004	574	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP5_chr3_196862920_196939714	1/1	a0001	755	297	81	60	101	13	40	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	a0002	754	4	0	0	4	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	a0003	755	1	0	0	0	1	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	a0004	755	1	0	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	a0005	755	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	a0006	755	1	0	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	a0007	755	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP6_chr6_75596880_75723281	1/0	a0001	1112	321	81	37	163	12	27	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/1	a0002	1112	26	2	7	7	4	5	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0003	1112	3	3	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0004	1112	3	0	0	3	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0005	1112	2	0	0	2	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0006	1112	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0007	1112	1	0	0	0	0	1	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0008	1112	1	0	0	1	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0009	1112	1	0	1	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0010	1112	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0011	1112	1	0	1	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	a0012	1112	1	0	0	0	0	1	copy fasta	SENP6	chr6	75596880	75723281
SENP7_chr3_101319205_101518212	1/1	a0001	1050	233	43	49	113	7	19	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0002	1050	91	17	14	51	2	7	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0003	1050	25	9	9	0	5	2	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0004	1050	6	6	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0005	1050	4	4	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0006	1050	3	3	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0007	1050	3	3	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0008	1050	1	0	0	1	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0009	1050	1	0	0	1	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0010	1050	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0011	1050	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	a0012	1050	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP8_chr15_72113403_72148692	0/1	a0001	212	385	88	66	180	14	36	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	1/0	a0002	212	13	10	2	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	a0003	212	2	0	0	0	0	2	copy fasta	SENP8	chr15	72113403	72148692
SEPHS1_chr10_13312428_13353293	1/1	a0001	392	376	88	80	155	16	35	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	a0002	392	1	0	0	0	0	1	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	a0003	392	1	0	0	1	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS2_chr16_30438631_30450874	1/1	a0001	59	342	88	72	130	16	34	copy fasta	SEPHS2	chr16	30438631	30450874
SEPSECS_chr4_25115014_25165449	1/1	a0001	501	387	74	71	186	13	41	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	a0002	501	61	16	10	27	1	7	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	a0003	501	5	4	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	a0004	501	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	a0005	501	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	a0006	501	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPTIN10_chr2_109537799_109618966	1/1	a0001	454	398	97	73	167	14	45	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	a0002	454	2	0	0	2	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	a0003	454	1	0	0	0	0	1	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	a0004	454	1	0	0	1	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	a0005	454	1	1	0	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966