JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEPTIN10_chr2_109537799_109618966	0/0	a0006	454	1	0	1	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN11_chr4_76944752_77043615	1/1	a0001	429	368	81	58	171	14	42	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	a0002	429	1	0	0	1	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	a0003	429	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN12_chr16_4772606_4793345	1/1	a0001	358	412	87	78	183	16	46	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	a0002	358	7	7	0	0	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	a0003	358	2	2	0	0	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	a0004	358	1	0	0	1	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN14_chr7_55788540_55867752	1/1	a0001	432	373	88	59	167	15	42	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0002	432	5	4	1	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0003	432	3	2	1	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0004	432	2	0	2	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0005	432	2	0	1	0	1	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0006	432	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0007	432	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0008	432	1	0	0	1	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0009	432	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	a0010	432	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN1_chr16_30373135_30387561	1/1	a0001	372	302	86	69	99	12	34	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	a0002	372	3	0	0	2	0	1	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	a0003	372	2	0	1	0	0	1	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	a0004	372	1	0	0	1	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	a0005	372	1	0	1	0	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	a0006	385	1	0	1	0	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN2_chr2_241310925_241359027	1/1	a0001	361	407	86	70	194	13	42	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	a0002	361	1	0	0	0	1	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN3_chr22_41964443_42003221	0/0	a0001	856	147	6	19	96	5	21	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	1/1	a0002	856	124	46	35	20	13	8	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0003	856	63	20	19	11	0	13	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0004	856	9	9	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0005	856	4	4	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0006	856	2	0	0	2	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0007	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0008	856	1	0	1	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0009	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0010	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0011	856	1	0	0	1	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0012	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0013	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0014	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0015	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0016	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	a0017	856	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN4_chr17_58515256_58549328	0/1	a0001	996	233	54	41	108	6	23	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0002	996	70	14	12	34	3	7	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	1/0	a0003	996	26	7	12	0	3	3	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0004	996	13	13	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0005	996	7	1	2	0	2	2	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0006	996	2	0	2	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0007	996	2	0	0	0	0	2	copy fasta	SEPTIN4	chr17	58515256	58549328