JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SERGEF_chr11_17783048_18018047	0/0	a0005	458	3	0	0	3	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	a0006	458	2	2	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	a0007	458	1	1	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	a0008	458	1	1	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	a0009	458	1	1	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	a0010	458	1	0	0	1	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERHL2_chr22_42548956_42579382	1/1	a0001	314	209	37	63	64	13	30	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0002	314	158	19	4	128	0	7	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0003	314	36	27	7	0	1	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0004	314	6	0	0	6	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0005	314	4	0	2	1	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0006	314	4	2	0	1	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0007	314	2	0	1	0	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0008	314	2	0	2	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0009	314	2	2	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0010	314	2	0	1	0	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0011	314	1	0	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0012	211	1	0	0	1	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0013	314	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0014	314	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0015	258	1	0	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0016	314	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	a0017	314	1	0	0	1	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERINC1_chr6_122438351_122476807	1/1	a0001	453	364	88	63	170	16	25	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	a0002	453	1	0	1	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	a0003	453	1	0	0	0	0	1	copy fasta	SERINC1	chr6	122438351	122476807
SERINC2_chr1_31408213_31439678	0/0	a0001	456	250	74	42	99	9	26	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	1/0	a0002	455	102	18	19	47	1	16	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/1	a0003	456	11	1	5	0	2	2	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0004	456	4	3	1	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0005	456	1	0	0	0	1	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0006	456	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0007	456	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0008	456	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0009	456	1	0	0	0	1	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0010	455	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0011	456	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0012	456	1	0	1	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	a0013	456	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC3_chr20_44492441_44527070	1/1	a0001	473	297	84	68	103	10	30	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	a0002	473	1	0	0	1	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	a0003	473	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	a0004	473	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC4_chr15_43789162_43805220	1/1	a0001	518	364	93	58	162	8	41	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	a0002	301	14	0	0	14	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	a0003	318	1	0	0	0	0	1	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	a0004	518	1	0	0	0	0	1	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	a0005	518	1	1	0	0	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	a0006	518	1	0	0	0	0	1	copy fasta	SERINC4	chr15	43789162	43805220
SERINC5_chr5_80133727_80261048	1/1	a0001	461	277	83	63	83	16	30	copy fasta	SERINC5	chr5	80133727	80261048