JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SERPINA3_chr14_94607391_94629053	0/0	a0006	423	1	1	0	0	0	0	copy fasta	SERPINA3	chr14	94607391	94629053
SERPINA3_chr14_94607391_94629053	0/0	a0007	237	1	0	0	1	0	0	copy fasta	SERPINA3	chr14	94607391	94629053
SERPINA3_chr14_94607391_94629053	0/0	a0008	423	1	0	0	0	1	0	copy fasta	SERPINA3	chr14	94607391	94629053
SERPINA3_chr14_94607391_94629053	0/0	a0009	423	1	0	1	0	0	0	copy fasta	SERPINA3	chr14	94607391	94629053
SERPINA3_chr14_94607391_94629053	0/0	a0010	423	1	0	1	0	0	0	copy fasta	SERPINA3	chr14	94607391	94629053
SERPINA3_chr14_94607391_94629053	0/0	a0011	423	1	1	0	0	0	0	copy fasta	SERPINA3	chr14	94607391	94629053
SERPINA3_chr14_94607391_94629053	0/0	a0012	423	1	0	0	1	0	0	copy fasta	SERPINA3	chr14	94607391	94629053
SERPINA3_chr14_94607391_94629053	0/0	a0013	423	1	0	0	1	0	0	copy fasta	SERPINA3	chr14	94607391	94629053
SERPINA4_chr14_94556442_94574906	1/1	a0001	427	425	90	70	199	18	46	copy fasta	SERPINA4	chr14	94556442	94574906
SERPINA4_chr14_94556442_94574906	0/0	a0002	427	1	0	0	1	0	0	copy fasta	SERPINA4	chr14	94556442	94574906
SERPINA4_chr14_94556442_94574906	0/0	a0003	427	1	0	0	1	0	0	copy fasta	SERPINA4	chr14	94556442	94574906
SERPINA4_chr14_94556442_94574906	0/0	a0004	427	1	0	0	1	0	0	copy fasta	SERPINA4	chr14	94556442	94574906
SERPINA5_chr14_94576426_94598118	1/0	a0001	406	208	6	46	125	9	21	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/1	a0002	406	116	33	22	31	8	21	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	a0003	406	116	49	6	55	1	5	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	a0004	406	9	8	1	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	a0005	406	8	0	0	8	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	a0006	406	2	2	0	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	a0007	406	2	0	0	2	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	a0008	406	1	0	0	1	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	a0009	406	1	0	0	0	0	1	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	a0010	406	1	0	1	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA6_chr14_94299248_94328336	0/1	a0001	405	298	45	48	171	4	29	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	a0002	405	124	47	29	24	6	18	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	a0003	405	2	0	0	2	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	a0004	405	1	0	0	1	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	a0005	405	1	0	1	0	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	a0006	405	1	0	0	0	0	1	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA7_chrX_106027435_106043727	1/1	a0001	415	246	56	47	112	7	22	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	a0002	415	48	5	12	25	0	6	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	a0003	415	9	9	0	0	0	0	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	a0004	415	3	0	0	3	0	0	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	a0005	415	1	1	0	0	0	0	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	a0006	415	1	1	0	0	0	0	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA9_chr14_94457721_94481197	0/1	a0001	417	119	4	22	77	3	12	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	1/0	a0002	417	94	28	10	46	2	7	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0003	417	57	0	13	32	6	6	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0004	417	45	1	3	37	0	4	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0005	417	36	5	10	5	5	11	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0006	417	18	2	5	8	2	1	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0007	417	17	13	4	0	0	0	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0008	417	17	0	2	14	0	1	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0009	417	8	0	2	6	0	0	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0010	416	7	7	0	0	0	0	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0011	417	5	5	0	0	0	0	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0012	183	5	5	0	0	0	0	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0013	187	5	5	0	0	0	0	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0014	417	4	1	2	0	0	1	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0015	187	3	3	0	0	0	0	copy fasta	SERPINA9	chr14	94457721	94481197
SERPINA9_chr14_94457721_94481197	0/0	a0016	417	3	3	0	0	0	0	copy fasta	SERPINA9	chr14	94457721	94481197