JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SERPINB5_chr18_63471958_63510085	0/0	a0007	375	2	2	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	a0008	375	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	a0009	375	1	0	0	1	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	a0010	375	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	a0011	375	1	0	0	1	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	a0012	375	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB6_chr6_2943159_2976567	1/1	a0001	376	291	86	50	115	15	23	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	a0002	376	86	2	20	50	3	11	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	a0003	376	4	0	0	4	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	a0004	376	2	0	0	2	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	a0005	376	1	0	0	1	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB7_chr18_63770418_63810370	1/0	a0001	380	361	87	55	173	12	33	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/1	a0002	380	58	9	17	21	4	6	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	a0003	380	5	0	4	0	1	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	a0004	265	3	0	0	3	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	a0005	380	2	0	0	2	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	a0006	380	1	0	0	0	1	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	a0007	380	1	0	0	1	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	a0008	380	1	0	0	0	0	1	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB8_chr18_63965081_63994374	0/0	a0001	374	149	12	34	73	7	23	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	1/0	a0002	374	100	17	20	50	3	9	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0003	374	63	17	13	24	6	3	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0004	374	47	24	4	15	2	2	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/1	a0005	374	43	4	3	26	0	9	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0006	374	24	2	2	20	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0007	374	19	15	0	3	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0008	374	8	2	0	5	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0009	374	5	0	0	5	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0010	374	2	2	0	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0011	374	1	1	0	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0012	374	1	0	0	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0013	374	1	0	0	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0014	374	1	1	0	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0015	374	1	1	0	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	a0016	374	1	0	0	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB9_chr6_2882270_2908309	1/1	a0001	376	451	89	81	216	18	45	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	a0002	376	5	5	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	a0003	376	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	a0004	376	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	a0005	376	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	a0006	376	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	a0007	376	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	a0008	376	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINC1_chr1_173898800_173922327	1/1	a0001	464	387	94	54	184	15	38	copy fasta	SERPINC1	chr1	173898800	173922327
SERPINC1_chr1_173898800_173922327	0/0	a0002	464	3	1	2	0	0	0	copy fasta	SERPINC1	chr1	173898800	173922327
SERPINC1_chr1_173898800_173922327	0/0	a0003	464	1	0	0	0	1	0	copy fasta	SERPINC1	chr1	173898800	173922327
SERPINC1_chr1_173898800_173922327	0/0	a0004	464	1	0	0	0	0	1	copy fasta	SERPINC1	chr1	173898800	173922327
SERPINC1_chr1_173898800_173922327	0/0	a0005	464	1	0	0	0	0	1	copy fasta	SERPINC1	chr1	173898800	173922327
SERPINC1_chr1_173898800_173922327	0/0	a0006	464	1	1	0	0	0	0	copy fasta	SERPINC1	chr1	173898800	173922327
SERPINC1_chr1_173898800_173922327	0/0	a0007	464	1	0	0	1	0	0	copy fasta	SERPINC1	chr1	173898800	173922327