JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP7B_chr13_51927669_52016450	0/0	a0013	1465	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0014	1465	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0015	1465	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0016	1465	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0017	1465	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	a0018	1465	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP8A1_chr4_42403373_42662105	1/1	a0001	1164	294	79	67	94	12	40	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	a0002	1164	8	7	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	a0003	1164	5	0	0	5	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	a0004	1164	1	0	0	1	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	a0005	724	1	0	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	a0006	1164	1	0	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A2_chr13_25366974_26030851	1/1	a0001	1188	122	70	32	12	0	6	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8B1_chr18_57641426_57808315	0/1	a0001	1251	285	75	61	100	16	32	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0002	1251	10	0	0	10	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0003	1251	7	0	2	1	0	4	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0004	1251	4	4	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0005	1251	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0006	1251	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0007	1251	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0008	1251	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	1/0	a0009	1251	1	0	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0010	1251	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0011	1251	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	a0012	1251	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B2_chr1_154320525_154356304	1/1	a0001	1190	364	91	71	151	12	37	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0002	1190	6	0	0	6	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0003	1190	2	0	0	0	0	2	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0004	1190	2	0	0	2	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0005	1190	1	1	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0006	1190	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0007	1190	1	0	0	0	0	1	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0008	1194	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0009	1190	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0010	1190	1	0	1	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0011	1190	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	a0012	1190	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B3_chr19_1777075_1817276	0/0	a0000	0	28	19	4	0	1	4	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	1/0	a0001	1300	144	38	33	43	7	22	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/1	a0002	1300	70	29	13	15	1	11	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0003	1300	69	4	25	35	1	4	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0004	1300	40	2	6	28	3	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0005	1300	16	1	2	10	0	3	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0006	1300	3	0	0	3	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0007	1300	2	0	0	2	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0008	1300	2	2	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0009	1300	2	0	0	2	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0010	1300	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0011	1300	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0012	1300	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276