JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SERPINC1_chr1_173898800_173922327	0/0	a0008	464	1	0	0	1	0	0	copy fasta	SERPINC1	chr1	173898800	173922327
SERPIND1_chr22_20769113_20792720	1/1	a0001	499	382	77	77	171	16	39	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0002	499	18	0	3	15	0	0	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0003	499	4	4	0	0	0	0	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0004	499	2	2	0	0	0	0	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0005	499	1	1	0	0	0	0	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0006	499	1	0	0	0	0	1	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0007	499	1	1	0	0	0	0	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0008	499	1	0	0	0	0	1	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0009	499	1	0	0	0	0	1	copy fasta	SERPIND1	chr22	20769113	20792720
SERPIND1_chr22_20769113_20792720	0/0	a0010	499	1	1	0	0	0	0	copy fasta	SERPIND1	chr22	20769113	20792720
SERPINE1_chr7_101122104_101144247	1/1	a0001	402	387	79	67	185	15	39	copy fasta	SERPINE1	chr7	101122104	101144247
SERPINE1_chr7_101122104_101144247	0/0	a0002	402	25	12	1	8	1	3	copy fasta	SERPINE1	chr7	101122104	101144247
SERPINE1_chr7_101122104_101144247	0/0	a0003	402	24	1	4	17	0	2	copy fasta	SERPINE1	chr7	101122104	101144247
SERPINE2_chr2_223970045_224044286	1/1	a0001	397	370	90	66	160	18	34	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	a0002	397	2	2	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	a0003	397	1	1	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	a0004	397	1	1	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE3_chr13_51334691_51369735	1/1	a0001	404	412	84	71	198	15	42	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	a0002	404	10	0	3	4	1	2	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	a0003	404	6	6	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	a0004	404	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	a0005	404	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	a0006	404	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	a0007	404	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINF1_chr17_1757060_1782565	0/1	a0001	418	251	86	42	96	9	17	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	1/0	a0002	418	173	10	36	94	6	26	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0003	418	5	0	0	5	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0004	418	3	0	0	3	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0005	418	2	1	1	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0006	418	2	0	1	0	0	1	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0007	418	2	0	0	0	0	2	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0008	418	1	1	0	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0009	418	1	0	1	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0010	418	1	0	0	1	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0011	418	1	0	0	0	1	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0012	362	1	0	0	1	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	a0013	418	1	0	1	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF2_chr17_1737871_1760265	0/1	a0001	491	237	51	43	118	6	18	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0002	491	95	18	19	39	3	16	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0003	491	91	21	21	37	6	6	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0004	491	11	3	2	4	1	1	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0005	491	3	0	0	3	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0006	491	2	0	0	0	0	2	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0007	491	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0008	491	1	0	1	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0009	491	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0010	491	1	0	0	0	0	1	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0011	491	1	0	0	1	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	a0012	491	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265