JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SERPING1_chr11_57592685_57619848	1/1	a0001	500	296	81	60	111	10	32	copy fasta	SERPING1	chr11	57592685	57619848
SERPING1_chr11_57592685_57619848	0/0	a0002	500	38	7	12	11	4	4	copy fasta	SERPING1	chr11	57592685	57619848
SERPING1_chr11_57592685_57619848	0/0	a0003	500	7	0	0	7	0	0	copy fasta	SERPING1	chr11	57592685	57619848
SERPING1_chr11_57592685_57619848	0/0	a0004	500	2	0	2	0	0	0	copy fasta	SERPING1	chr11	57592685	57619848
SERPING1_chr11_57592685_57619848	0/0	a0005	500	1	0	0	1	0	0	copy fasta	SERPING1	chr11	57592685	57619848
SERPINH1_chr11_75557253_75577783	1/1	a0001	418	431	97	66	206	15	45	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	a0002	418	1	0	0	1	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	a0003	418	1	1	0	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	a0004	418	1	0	0	1	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	a0005	418	1	0	0	0	1	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	a0006	418	1	0	0	0	0	1	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINI1_chr3_167730721_167830569	1/1	a0001	410	192	56	27	74	14	19	copy fasta	SERPINI1	chr3	167730721	167830569
SERPINI1_chr3_167730721_167830569	0/0	a0002	410	34	17	11	3	0	3	copy fasta	SERPINI1	chr3	167730721	167830569
SERPINI1_chr3_167730721_167830569	0/0	a0003	410	3	3	0	0	0	0	copy fasta	SERPINI1	chr3	167730721	167830569
SERPINI1_chr3_167730721_167830569	0/0	a0004	410	2	0	1	1	0	0	copy fasta	SERPINI1	chr3	167730721	167830569
SERPINI1_chr3_167730721_167830569	0/0	a0005	410	1	0	1	0	0	0	copy fasta	SERPINI1	chr3	167730721	167830569
SERPINI2_chr3_167436933_167479042	1/1	a0001	405	166	43	31	66	5	19	copy fasta	SERPINI2	chr3	167436933	167479042
SERPINI2_chr3_167436933_167479042	0/0	a0002	405	120	28	20	65	3	4	copy fasta	SERPINI2	chr3	167436933	167479042
SERPINI2_chr3_167436933_167479042	0/0	a0003	405	64	14	13	20	6	11	copy fasta	SERPINI2	chr3	167436933	167479042
SERPINI2_chr3_167436933_167479042	0/0	a0004	405	1	0	0	1	0	0	copy fasta	SERPINI2	chr3	167436933	167479042
SERPINI2_chr3_167436933_167479042	0/0	a0005	363	1	1	0	0	0	0	copy fasta	SERPINI2	chr3	167436933	167479042
SERTAD1_chr19_40416589_40430992	0/1	a0001	236	194	84	37	34	8	30	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	1/0	a0002	236	171	10	37	97	10	16	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	a0003	236	1	0	0	0	0	1	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	a0004	236	1	0	0	0	0	1	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	a0005	34	1	0	0	1	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD2_chr2_64626621_64658913	1/1	a0001	314	422	94	70	198	16	42	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	a0002	314	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	a0003	314	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD3_chr19_40435844_40449335	1/1	a0001	196	378	96	68	150	18	44	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD4_chr1_210227796_210251255	1/1	a0001	356	410	96	70	184	18	40	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	a0002	356	3	0	2	0	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	a0003	356	2	2	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	a0004	356	2	2	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	a0005	356	1	0	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	a0006	356	1	0	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	a0007	356	1	0	0	0	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTM1_chr13_36669020_36702839	1/1	a0001	107	435	98	74	197	18	46	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	a0002	107	3	0	0	3	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM2_chrX_111506645_111527399	1/1	a0001	90	258	78	39	100	11	28	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	a0002	90	1	0	0	1	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SESN1_chr6_108979309_109099846	1/1	a0001	551	155	62	26	40	5	20	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	a0002	551	26	1	6	8	3	8	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	a0003	550	2	2	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	a0004	551	1	1	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN2_chr1_28254518_28287491	0/0	a0001	480	316	86	66	112	16	36	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	a0002	480	13	0	0	13	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	a0003	480	5	0	0	5	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	a0004	480	3	3	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	a0005	480	1	1	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491