JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SESN3_chr11_95160513_95236202	1/1	a0001	492	390	80	68	182	16	42	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	a0002	492	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	a0003	498	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESTD1_chr2_179096678_179269832	1/1	a0001	696	268	86	39	96	12	33	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	a0002	696	3	3	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	a0003	696	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	a0004	696	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	a0005	696	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SETBP1_chr18_44675888_45073510	1/1	a0001	1596	83	43	15	14	4	5	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0002	1596	18	11	5	1	0	1	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0003	1596	15	1	9	4	0	1	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0004	1596	11	1	1	9	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0005	1590	4	2	0	2	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0006	1590	2	0	1	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0007	1590	2	0	2	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0008	1596	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0009	1596	1	0	0	0	0	1	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0010	1596	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0011	1596	1	0	1	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	a0012	1596	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETD1A_chr16_30952754_30989664	1/1	a0001	1707	260	72	64	80	17	25	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0002	1707	2	2	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0003	1707	2	1	1	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0004	1707	2	2	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0005	1707	2	0	1	0	1	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0006	1707	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0007	1707	1	0	0	0	0	1	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0008	1707	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0009	1707	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0010	1707	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	a0011	1707	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1B_chr12_121799009_121837656	1/1	a0001	1966	199	58	44	55	14	26	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0002	840	22	6	2	10	0	4	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0003	1966	8	5	1	1	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0004	840	7	3	2	2	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0005	723	4	2	1	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0006	1966	3	3	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0007	1966	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0008	1966	2	0	0	2	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0009	1966	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0010	1966	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0011	1966	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0012	1966	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0013	1966	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0014	1966	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0015	1966	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0016	1966	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0017	1966	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0018	1966	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0019	1966	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656