JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SETD1B_chr12_121799009_121837656	0/0	a0020	1966	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0021	1966	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	a0022	840	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD2_chr3_47011436_47169113	1/0	a0001	2564	130	39	23	47	5	15	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/1	a0002	2564	107	13	23	52	5	13	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0003	2564	26	1	5	18	1	1	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0004	2564	24	23	1	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0005	2564	4	2	2	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0006	2564	3	0	0	3	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0007	2564	2	2	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0008	2564	1	0	0	0	0	1	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0009	2564	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0010	2564	1	0	1	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0011	2564	1	0	0	0	1	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0012	2564	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0013	2564	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0014	2564	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0015	2564	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0016	2564	1	0	1	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0017	2564	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0018	2564	1	0	0	0	0	1	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	a0019	2564	1	0	0	0	0	1	copy fasta	SETD2	chr3	47011436	47169113
SETD3_chr14_99392748_99485859	1/1	a0001	594	287	74	46	123	12	30	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	a0002	594	1	1	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	a0003	594	1	1	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	a0004	594	1	0	0	1	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD4_chr21_36029541_36065526	1/1	a0001	440	391	91	64	178	14	42	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	a0002	440	4	0	1	0	2	1	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	a0003	440	1	0	0	0	0	1	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	a0004	440	1	1	0	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	a0005	440	1	0	1	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD5_chr3_9392615_9483154	1/1	a0001	1442	217	76	41	73	12	13	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	a0002	1442	11	2	4	0	0	5	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	a0003	1442	5	2	3	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	a0004	1442	4	0	0	4	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	a0005	1442	2	2	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	a0006	1442	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD6_chr16_58510517_58528842	1/1	a0001	473	422	88	66	200	18	48	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	a0002	473	2	2	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	a0003	473	1	1	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	a0004	473	1	1	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD7_chr4_139501038_139561219	1/0	a0001	366	313	95	60	104	17	36	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/1	a0002	366	3	1	0	0	1	0	copy fasta	SETD7	chr4	139501038	139561219
SETD9_chr5_56904596_56922348	1/0	a0001	299	239	44	31	136	4	23	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	a0002	299	143	30	30	58	6	19	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/1	a0003	299	42	9	17	9	2	4	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	a0004	299	1	1	0	0	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	a0005	299	1	0	0	1	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETDB1_chr1_150921363_150969737	1/1	a0001	1292	332	83	56	137	17	37	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0002	1292	5	4	0	0	0	1	copy fasta	SETDB1	chr1	150921363	150969737