JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SETDB1_chr1_150921363_150969737	0/0	a0003	1292	4	0	0	0	0	4	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0004	1292	2	0	0	2	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0005	1292	2	0	0	2	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0006	1292	1	0	0	1	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0007	1292	1	0	0	0	1	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0008	1292	1	0	1	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0009	1292	1	0	1	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0010	1292	1	0	0	1	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0011	1292	1	0	0	1	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	a0012	1292	1	1	0	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB2_chr13_49439274_49500003	0/1	a0001	707	289	54	48	161	8	17	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	1/0	a0002	707	59	4	19	22	4	9	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	a0003	707	34	16	3	9	0	6	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	a0004	707	14	13	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	a0005	707	5	0	5	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	a0006	707	2	0	2	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	a0007	707	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	a0008	707	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	a0009	666	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETMAR_chr3_4298369_4322265	1/1	a0001	684	357	54	67	188	11	35	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0002	684	57	13	6	25	5	8	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0003	684	10	10	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0004	684	4	3	1	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0005	684	3	0	0	3	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0006	684	3	3	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0007	684	2	2	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0008	684	2	0	2	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0009	684	2	2	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0010	684	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0011	684	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0012	684	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0013	684	1	1	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0014	684	1	0	0	0	0	1	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0015	684	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0016	684	1	1	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	a0017	684	1	1	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETSIP_chr1_92069533_92080411	1/0	a0001	292	319	80	61	127	14	36	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0002	121	17	3	5	8	0	1	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0003	292	13	0	0	13	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0004	293	3	3	0	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0005	292	3	0	0	1	0	2	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0006	292	2	2	0	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0007	292	1	0	1	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0008	292	1	1	0	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0009	292	1	0	0	0	0	1	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0010	292	1	1	0	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0011	292	1	0	1	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	a0012	292	1	0	0	1	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETX_chr9_132256356_132359986	0/1	a0001	2677	90	11	21	32	7	18	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0002	2677	46	6	4	32	2	2	copy fasta	SETX	chr9	132256356	132359986