JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SETX_chr9_132256356_132359986	0/0	a0003	2677	39	5	0	31	1	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0004	2677	36	12	5	12	2	5	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0005	2677	35	0	4	29	0	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0006	2677	28	24	1	1	0	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0007	2677	21	10	4	5	2	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0008	2677	8	0	0	8	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0009	2677	6	0	2	4	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0010	2677	4	3	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0011	2677	3	0	0	2	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0012	2677	3	3	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0013	2677	3	3	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0014	2677	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0015	2677	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0016	2677	2	1	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0017	2677	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0018	2677	2	0	0	1	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0019	2677	2	0	0	2	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0020	2677	2	0	0	2	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0021	2677	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0022	2677	2	0	0	0	0	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0023	2677	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0024	2677	1	0	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0025	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0026	2677	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0027	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0028	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0029	2677	1	0	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0030	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0031	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	1/0	a0032	2677	1	0	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0033	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0034	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0035	2677	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0036	2677	1	0	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0037	2677	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0038	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0039	2677	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0040	2677	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0041	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0042	2677	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0043	2677	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	a0044	2677	1	0	0	0	0	1	copy fasta	SETX	chr9	132256356	132359986
SET_chr9_128684222_128701396	1/1	a0001	277	392	88	67	186	12	37	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	a0002	277	2	0	1	1	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	a0003	277	1	0	0	0	0	1	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	a0004	277	1	0	0	1	0	0	copy fasta	SET	chr9	128684222	128701396
SEZ6L2_chr16_29866159_29904550	0/1	a0001	923	186	80	35	45	7	18	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	1/0	a0002	923	70	0	8	46	1	14	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	a0003	923	45	0	1	44	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	a0004	923	2	0	0	2	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550