JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEZ6L2_chr16_29866159_29904550	0/0	a0005	923	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	a0006	923	1	0	1	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	a0007	923	1	0	0	1	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	a0008	923	1	0	1	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	a0009	923	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L_chr22_26164462_26388596	1/1	a0001	1024	153	34	46	46	9	16	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0002	1024	51	30	13	6	2	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0003	1024	16	15	0	0	0	1	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0004	1024	6	0	3	0	1	2	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0005	1024	4	4	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0006	1024	2	0	0	0	0	2	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0007	1024	2	0	0	0	0	2	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0008	1024	1	0	0	1	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0009	1024	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0010	1024	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0011	1024	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0012	1024	1	0	0	1	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	a0013	1024	1	0	0	0	0	1	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6_chr17_28949905_29011033	1/0	a0001	994	160	36	31	68	6	18	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0002	994	57	22	9	21	2	3	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/1	a0003	994	55	11	9	21	1	12	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0004	994	10	8	2	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0005	994	3	0	0	0	0	3	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0006	994	3	3	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0007	994	2	2	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0008	994	2	0	2	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0009	994	2	2	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0010	994	2	2	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0011	994	1	0	0	0	1	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0012	994	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0013	994	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	a0014	994	1	0	1	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SF1_chr11_64759606_64783542	1/1	a0001	639	342	90	54	152	12	32	copy fasta	SF1	chr11	64759606	64783542
SF3A1_chr22_30326988_30361894	1/1	a0001	793	398	92	80	165	18	41	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	a0002	793	2	0	0	2	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	a0003	793	1	0	0	0	0	1	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	a0004	793	1	0	0	1	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A2_chr19_2231824_2253655	1/1	a0001	464	384	92	61	171	17	41	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0002	471	18	2	10	2	0	4	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0003	457	10	1	8	0	0	1	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0004	464	2	0	0	2	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0005	464	1	0	0	1	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0006	464	1	0	0	0	1	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0007	464	1	0	0	1	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0008	471	1	0	1	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0009	464	1	1	0	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	a0010	457	1	0	0	1	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A3_chr1_37951975_37995022	1/1	a0001	501	400	96	70	180	14	38	copy fasta	SF3A3	chr1	37951975	37995022
SF3B1_chr2_197384784_197440028	1/1	a0001	1304	344	84	66	152	10	30	copy fasta	SF3B1	chr2	197384784	197440028
SF3B2_chr11_66047364_66074308	1/1	a0001	895	373	91	64	172	16	28	copy fasta	SF3B2	chr11	66047364	66074308