JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SF3B2_chr11_66047364_66074308	0/0	a0002	896	18	0	0	16	0	2	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	a0003	895	1	0	0	1	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	a0004	895	1	0	0	1	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	a0005	895	1	1	0	0	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B3_chr16_70518816_70582668	1/1	a0001	1217	340	72	58	164	12	32	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	a0002	1217	2	0	0	2	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B4_chr1_149918317_149932803	1/1	a0001	424	350	90	62	146	14	36	copy fasta	SF3B4	chr1	149918317	149932803
SF3B5_chr6_144089884_144100573	1/1	a0001	86	442	96	86	204	12	42	copy fasta	SF3B5	chr6	144089884	144100573
SF3B6_chr2_24062586_24081326	1/1	a0001	125	350	92	64	134	18	40	copy fasta	SF3B6	chr2	24062586	24081326
SFI1_chr22_31491536_31623588	0/0	a0001	1242	90	1	22	55	8	4	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/1	a0002	1242	90	20	7	51	1	10	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0003	1242	52	18	7	10	5	12	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0004	1242	14	4	4	2	0	4	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0005	1242	12	0	4	8	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0006	1242	10	5	2	0	0	3	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0007	1242	9	9	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0008	1242	5	5	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0009	1242	4	0	4	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0010	1242	4	4	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0011	1242	4	2	0	0	2	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0012	1241	3	3	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0013	1242	3	0	3	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0014	1242	2	0	0	0	0	2	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0015	1242	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0016	1242	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0017	1242	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0018	1242	2	0	0	1	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0019	167	1	0	1	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0020	1242	1	0	0	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0021	1242	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0022	1242	1	0	0	0	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0023	1242	1	0	0	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0024	1242	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0025	1242	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0026	1242	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	1/0	a0027	1242	1	0	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0028	1242	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0029	1242	1	0	0	0	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	a0030	1242	1	0	0	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFMBT1_chr3_52898572_53051073	1/1	a0001	866	324	80	66	126	10	40	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	a0002	866	1	1	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	a0003	866	1	1	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	a0004	866	1	0	0	1	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	a0005	866	1	0	0	1	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT2_chr10_7153624_7416034	1/1	a0001	894	137	75	33	9	2	16	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	a0002	894	2	1	1	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	a0003	894	2	2	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	a0004	894	1	0	0	1	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	a0005	894	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	a0006	894	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034