JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SFN_chr1_26858149_26869456	1/1	a0001	248	332	88	74	110	16	42	copy fasta	SFN	chr1	26858149	26869456
SFPQ_chr1_35177936_35198145	1/1	a0001	707	374	92	53	183	12	32	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	a0002	707	2	0	0	2	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	a0003	702	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	a0004	707	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	a0005	707	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	a0006	707	1	0	1	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFR1_chr10_104117171_104131383	1/1	a0001	245	318	53	68	140	14	41	copy fasta	SFR1	chr10	104117171	104131383
SFR1_chr10_104117171_104131383	0/0	a0002	245	108	37	8	56	2	5	copy fasta	SFR1	chr10	104117171	104131383
SFRP1_chr8_41256962_41314473	1/1	a0001	314	264	87	47	92	10	26	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	a0002	313	119	5	33	59	4	18	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	a0003	313	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP2_chr4_153775591_153794083	1/1	a0001	295	377	57	58	210	9	41	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	a0002	295	53	29	8	3	7	6	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	a0003	295	2	2	0	0	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	a0004	295	1	0	0	0	0	1	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	a0005	295	1	0	0	1	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP4_chr7_37900932_37921817	1/1	a0001	346	215	35	32	111	6	29	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	a0002	346	131	38	27	54	7	5	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	a0003	346	125	25	23	59	2	16	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	a0004	346	1	0	0	0	1	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP5_chr10_97761751_97776999	0/1	a0001	317	255	90	43	85	8	28	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	1/0	a0002	317	118	2	22	79	4	10	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	a0003	317	1	1	0	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	a0004	317	1	1	0	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	a0005	317	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	a0006	317	1	0	1	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	a0007	317	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	a0008	317	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	a0009	317	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFSWAP_chr12_131706090_131804738	0/0	a0000	0	5	2	1	2	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/1	a0001	951	284	69	69	104	10	31	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	1/0	a0002	951	18	11	1	1	2	2	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0003	951	2	2	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0004	951	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0005	951	1	0	1	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0006	951	1	0	0	1	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0007	951	1	0	0	1	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0008	951	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0009	951	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0010	951	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0011	951	1	0	0	1	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	a0012	951	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFT2D1_chr6_166314728_166347545	1/1	a0001	159	307	91	65	91	15	43	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	0/0	a0002	159	79	1	11	63	1	3	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	0/0	a0003	159	2	0	0	2	0	0	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D2_chr1_168221004_168258021	1/1	a0001	160	351	88	52	161	10	38	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	a0002	160	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D3_chr2_127696497_127710242	1/1	a0001	215	205	40	48	92	8	15	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	a0002	215	151	55	24	49	6	17	copy fasta	SFT2D3	chr2	127696497	127710242