JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SFT2D3_chr2_127696497_127710242	0/0	a0003	215	14	0	3	7	0	4	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	a0004	215	4	2	1	0	1	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	a0005	221	4	0	0	3	1	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	a0006	215	2	0	0	2	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	a0007	211	2	0	0	0	2	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	a0008	215	2	0	0	2	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	a0009	215	1	1	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	a0010	215	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFTA2_chr6_30926353_30937170	0/1	a0001	78	411	83	72	200	14	41	copy fasta	SFTA2	chr6	30926353	30937170
SFTA2_chr6_30926353_30937170	0/0	a0002	78	24	7	6	2	2	7	copy fasta	SFTA2	chr6	30926353	30937170
SFTPA1_chr10_79605939_79620443	1/0	a0001	248	191	41	26	101	2	20	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/1	a0002	248	176	43	39	63	12	18	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0003	248	67	7	7	51	2	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0004	248	29	2	13	8	0	6	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0005	248	2	0	0	2	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0006	248	1	0	1	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0007	248	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0008	227	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0009	248	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0010	248	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0011	248	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	a0012	248	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA2_chr10_79550852_79565407	0/1	a0001	248	208	30	49	95	9	24	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0002	248	104	30	7	50	1	16	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0003	248	87	14	14	52	2	5	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	1/0	a0004	248	30	10	8	11	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0005	248	12	0	0	12	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0006	248	9	6	2	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0007	248	7	0	0	7	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0008	248	6	0	4	0	0	2	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0009	248	4	4	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0010	248	1	0	0	0	0	1	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0011	248	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0012	248	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0013	248	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	a0014	248	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPB_chr2_85652314_85673199	1/1	a0001	381	232	17	42	139	7	25	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0002	381	172	75	29	41	5	22	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0003	381	8	0	7	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0004	381	3	3	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0005	381	2	2	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0006	381	2	2	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0007	381	2	0	0	2	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0008	381	1	0	0	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0009	381	1	1	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0010	381	1	0	0	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0011	381	1	0	0	0	0	1	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	a0012	381	1	0	0	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPC_chr8_22156798_22169479	1/1	a0001	191	358	87	65	156	15	33	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	a0002	191	81	4	17	47	0	13	copy fasta	SFTPC	chr8	22156798	22169479