JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP8B3_chr19_1777075_1817276	0/0	a0013	1300	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0014	1300	1	0	0	0	1	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0015	1300	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0016	1300	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0017	1300	1	0	1	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0018	1300	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0019	1300	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0020	1300	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0021	1300	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0022	1300	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	a0023	1300	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B4_chr15_49853238_50124233	0/1	a0001	1192	85	30	16	15	10	13	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	1/0	a0002	1192	74	7	23	30	1	12	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0003	1192	58	11	11	26	5	5	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0004	1192	9	9	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0005	1192	6	4	0	1	0	1	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0006	1192	4	4	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0007	1192	3	3	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0008	1192	3	3	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0009	1192	2	2	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0010	1192	2	2	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0011	1192	2	1	0	0	0	1	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0012	1192	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0013	1192	1	0	0	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0014	1192	1	0	0	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0015	1192	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0016	1192	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	a0017	1192	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP9A_chr20_51591514_51773390	1/1	a0001	1047	310	90	66	109	16	27	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	a0002	1047	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	a0003	1047	1	0	0	0	0	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9B_chr18_79064394_79383283	1/1	a0001	1147	168	45	32	72	5	12	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0002	1147	92	13	13	47	6	13	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0003	1147	9	8	1	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0004	1147	8	1	3	0	3	1	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0005	1147	7	7	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0006	1147	3	3	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0007	1147	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0008	1147	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0009	1147	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0010	1147	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0011	1147	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0012	1147	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0013	1147	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0014	1147	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0015	1147	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0016	1147	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	a0017	1147	1	0	1	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATPAF1_chr1_46627737_46673364	0/0	a0001	328	359	85	51	183	8	32	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	1/1	a0002	328	51	9	7	15	4	14	copy fasta	ATPAF1	chr1	46627737	46673364