JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SFTPC_chr8_22156798_22169479	0/0	a0003	191	22	5	2	12	1	2	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	a0004	191	2	2	0	0	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	a0005	191	1	0	0	1	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	a0006	191	1	0	0	1	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	a0007	191	1	0	0	1	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPD_chr10_79932740_79954105	0/1	a0001	375	185	26	14	116	3	25	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0002	375	98	43	24	28	2	1	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	1/0	a0003	375	87	2	22	49	6	7	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0004	375	30	3	13	8	0	6	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0005	375	9	9	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0006	375	7	2	4	0	0	1	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0007	375	2	0	1	0	1	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0008	375	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0009	375	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0010	375	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0011	375	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0012	375	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	a0013	375	1	0	0	1	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFXN1_chr5_175473560_175534742	1/1	a0001	322	366	89	69	146	14	46	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	a0002	322	2	2	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	a0003	322	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	a0004	322	1	0	1	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	a0005	322	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	a0006	322	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN2_chr10_102709636_102748492	1/1	a0001	322	396	90	78	182	10	34	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	a0002	322	4	4	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	a0003	322	2	0	0	2	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	a0004	322	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	a0005	322	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN3_chr10_101026234_101046241	1/1	a0001	321	429	82	83	200	18	44	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	a0002	321	7	6	1	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	a0003	321	6	6	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	a0004	287	1	0	0	0	0	1	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	a0005	321	1	0	0	0	0	1	copy fasta	SFXN3	chr10	101026234	101046241
SFXN4_chr10_119135767_119170714	1/1	a0001	337	428	93	83	184	18	48	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	a0002	337	1	1	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	a0003	337	1	0	0	1	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	a0004	337	1	0	1	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	a0005	337	1	0	0	1	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN5_chr2_72937036_73076712	1/1	a0001	340	247	88	43	78	10	26	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	a0002	340	2	2	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	a0003	340	1	0	1	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SGCA_chr17_50161005_50180928	1/1	a0001	387	408	96	83	161	18	48	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	a0002	387	4	4	0	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	a0003	387	1	0	0	1	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	a0004	387	1	0	1	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	a0005	374	1	0	0	1	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	a0006	387	1	0	0	1	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCB_chr4_52015706_52043299	0/0	a0001	318	366	83	68	158	18	39	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	a0002	318	1	1	0	0	0	0	copy fasta	SGCB	chr4	52015706	52043299