JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SGCB_chr4_52015706_52043299	0/0	a0003	318	1	0	0	0	0	1	copy fasta	SGCB	chr4	52015706	52043299
SGCD_chr5_156322164_156772788	1/1	a0001	290	146	65	24	42	3	10	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	a0002	290	2	1	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	a0003	290	1	0	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	a0004	290	1	0	0	0	1	0	copy fasta	SGCD	chr5	156322164	156772788
SGCE_chr7_94579980_94661133	1/1	a0001	437	388	81	58	199	8	40	copy fasta	SGCE	chr7	94579980	94661133
SGCE_chr7_94579980_94661133	0/0	a0002	437	1	1	0	0	0	0	copy fasta	SGCE	chr7	94579980	94661133
SGCE_chr7_94579980_94661133	0/0	a0003	437	1	0	0	1	0	0	copy fasta	SGCE	chr7	94579980	94661133
SGCG_chr13_23175979_23330162	0/1	a0001	291	297	56	66	135	10	29	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	1/0	a0002	291	39	30	7	0	1	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	a0003	291	15	0	5	3	5	2	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	a0004	291	1	0	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	a0005	291	1	0	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	a0006	291	1	0	0	0	0	1	copy fasta	SGCG	chr13	23175979	23330162
SGCZ_chr8_14079845_15243431	0/0	a0001	312	96	46	28	16	0	6	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	a0002	312	5	5	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	a0003	312	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGF29_chr16_28548920_28596790	1/1	a0001	293	345	90	64	139	10	40	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	a0002	293	1	0	0	1	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGIP1_chr1_66529153_66756139	1/1	a0001	828	200	43	45	80	7	23	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	a0002	828	88	34	13	28	3	10	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	a0003	828	6	2	3	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	a0004	828	2	0	2	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	a0005	828	2	0	0	0	0	2	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	a0006	828	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	a0007	828	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	a0008	828	1	0	1	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	a0009	828	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGK1_chr6_134164256_134323112	1/1	a0001	526	244	76	51	78	12	25	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	a0002	526	2	0	0	0	0	2	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	a0003	526	1	0	1	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	a0004	526	1	1	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	a0005	526	1	1	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	a0006	526	1	0	0	0	0	1	copy fasta	SGK1	chr6	134164256	134323112
SGK2_chr20_43554027_43590627	1/1	a0001	367	414	86	72	198	12	44	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	a0002	367	1	1	0	0	0	0	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	a0003	367	1	1	0	0	0	0	copy fasta	SGK2	chr20	43554027	43590627
SGK3_chr8_66707781_66867022	1/1	a0001	496	142	76	22	26	0	16	copy fasta	SGK3	chr8	66707781	66867022
SGMS1_chr10_50300600_50628956	1/1	a0001	413	311	86	66	119	8	30	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	a0002	413	1	0	0	1	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS2_chr4_107819932_107920047	1/1	a0001	365	267	85	69	66	14	31	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	a0002	365	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	a0003	365	1	0	1	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	a0004	365	1	0	0	0	0	1	copy fasta	SGMS2	chr4	107819932	107920047
SGO1_chr3_20164484_20191206	1/1	a0001	527	415	82	72	200	16	43	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	a0002	527	7	6	1	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	a0003	527	3	1	2	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	a0004	527	2	2	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	a0005	527	1	0	1	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	a0006	527	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206