JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SGO1_chr3_20164484_20191206	0/0	a0007	527	1	0	0	0	0	1	copy fasta	SGO1	chr3	20164484	20191206
SGO2_chr2_200521207_200589096	1/0	a0001	1265	295	49	61	137	14	33	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/1	a0002	1265	29	0	9	17	2	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0003	1265	17	7	6	0	0	4	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0004	1265	9	9	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0005	1265	9	7	2	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0006	1265	6	0	0	6	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0007	1265	5	5	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0008	1265	2	2	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0009	1265	2	0	0	2	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0010	1265	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0011	1265	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0012	1265	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0013	1258	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0014	1265	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0015	1265	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0016	1265	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0017	1265	1	0	0	0	0	1	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0018	1265	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	a0019	1265	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGPL1_chr10_70810948_70886184	1/1	a0001	568	387	89	69	170	16	41	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	a0002	568	8	1	5	0	1	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	a0003	568	4	3	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	a0004	568	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	a0005	568	1	0	0	0	1	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	a0006	568	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPP1_chr14_63679216_63733065	1/1	a0001	441	284	90	50	100	8	34	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	a0002	441	2	2	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	a0003	441	1	1	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	a0004	441	1	1	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP2_chr2_222419543_222567621	1/1	a0001	399	269	64	55	101	14	33	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	a0002	399	2	0	1	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	a0003	399	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGSH_chr17_80204276_80225333	1/1	a0001	502	252	52	40	116	13	29	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0002	502	123	14	33	62	2	12	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0003	502	20	16	3	0	1	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0004	134	7	0	1	5	0	1	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0005	502	6	6	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0006	502	4	4	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0007	502	2	0	0	0	0	2	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0008	502	1	0	1	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0009	502	1	0	0	0	0	1	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0010	502	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0011	502	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0012	502	1	0	0	1	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	a0013	502	1	0	0	0	0	1	copy fasta	SGSH	chr17	80204276	80225333
SGSM1_chr22_24801211_24932578	1/1	a0001	1093	243	46	66	88	10	31	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0002	1093	47	7	6	25	0	9	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0003	1093	32	31	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0004	1093	4	4	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578