JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SGSM1_chr22_24801211_24932578	0/0	a0005	1093	2	2	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0006	1093	1	0	0	0	1	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0007	1093	1	0	0	0	1	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0008	1093	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0009	1093	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0010	1093	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0011	1093	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0012	1093	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0013	1093	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0014	1093	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	a0015	1093	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM2_chr17_2332501_2386054	0/1	a0001	1051	249	44	26	141	10	27	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	1/0	a0002	1051	132	28	48	32	6	17	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0003	1051	7	7	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0004	1051	4	0	0	4	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0005	1051	3	0	0	3	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0006	1051	3	0	0	3	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0007	1051	3	3	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0008	292	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0009	1051	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0010	1051	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0011	1051	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0012	1044	1	0	1	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0013	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0014	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0015	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0016	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0017	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0018	1051	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0019	1051	1	0	0	0	0	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0020	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0021	1051	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0022	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0023	1051	1	0	0	0	0	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0024	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0025	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0026	1051	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0027	1051	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	a0028	1051	1	0	1	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM3_chr22_40365594_40415289	1/1	a0001	749	283	85	55	101	10	30	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0002	749	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0003	749	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0004	749	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0005	749	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0006	749	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0007	749	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0008	749	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0009	749	1	0	1	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	a0010	749	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGTA_chr19_2749715_2788273	1/1	a0001	313	394	90	78	170	18	36	copy fasta	SGTA	chr19	2749715	2788273