JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SGTA_chr19_2749715_2788273	0/0	a0002	313	1	0	0	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	a0003	313	1	0	0	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTB_chr5_65660928_65727109	1/1	a0001	304	359	94	70	148	13	32	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	a0002	304	1	0	0	0	1	0	copy fasta	SGTB	chr5	65660928	65727109
SH2B1_chr16_28858843_28879205	1/0	a0001	756	289	53	32	156	10	37	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/1	a0002	756	87	27	24	26	2	7	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	a0003	756	1	1	0	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	a0004	756	1	0	0	1	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	a0005	756	1	0	0	1	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	a0006	756	1	1	0	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B2_chr7_102281868_102326711	1/1	a0001	632	374	70	70	172	18	42	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0002	632	14	14	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0003	632	4	3	1	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0004	632	3	3	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0005	632	2	2	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0006	632	1	1	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0007	632	1	0	0	0	0	1	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0008	632	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0009	632	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0010	632	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0011	632	1	0	0	0	0	1	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0012	632	1	1	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0013	632	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	a0014	632	1	0	1	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B3_chr12_111400923_111456623	0/1	a0001	575	250	39	31	143	3	33	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	a0002	575	42	38	4	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	1/0	a0003	575	17	3	10	0	3	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	a0004	575	8	0	0	8	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	a0005	575	2	2	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	a0006	575	2	2	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	a0007	575	2	0	0	2	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	a0008	567	1	0	0	0	0	1	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	a0009	575	1	0	1	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	a0010	575	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2D1A_chrX_124341563_124378160	1/1	a0001	128	315	79	57	135	10	32	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	a0002	52	1	0	0	0	1	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	a0003	102	1	0	0	1	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	a0004	128	1	0	0	1	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1B_chr1_162390268_162417136	1/1	a0001	132	369	87	62	170	10	38	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	a0002	132	49	2	14	24	4	5	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	a0003	132	3	3	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	a0004	132	1	0	0	0	0	1	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	a0005	132	1	0	0	1	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	a0006	132	1	0	0	1	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D2A_chr1_156801243_156821848	0/1	a0001	389	252	38	46	124	13	30	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	1/0	a0002	389	150	56	32	41	3	17	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	a0003	389	2	2	0	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	a0004	389	1	1	0	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	a0005	389	1	0	0	0	0	1	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	a0006	389	1	0	0	1	0	0	copy fasta	SH2D2A	chr1	156801243	156821848