JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SH2D2A_chr1_156801243_156821848	0/0	a0007	389	1	0	0	1	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	a0008	389	1	0	0	1	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	a0009	389	1	1	0	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D3A_chr19_6747160_6772435	1/1	a0001	576	271	34	52	140	11	32	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0002	576	55	34	8	0	4	9	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0003	576	26	9	2	13	1	1	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0004	576	9	8	1	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0005	576	7	0	5	0	0	2	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0006	576	6	6	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0007	576	1	1	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0008	576	1	0	0	1	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0009	576	1	1	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0010	576	1	1	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0011	576	1	0	0	1	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	a0012	576	1	0	0	1	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3C_chr9_127733317_127783666	0/0	a0001	860	187	15	35	111	6	20	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	1/1	a0002	860	99	42	25	9	2	19	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	a0003	860	40	28	1	10	0	1	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	a0004	860	1	0	0	1	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	a0005	860	1	0	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	a0006	860	1	0	0	1	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	a0007	860	1	0	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	a0008	860	1	0	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	a0009	860	1	1	0	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D4A_chr8_19308693_19401218	1/1	a0001	454	208	40	38	85	11	32	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0002	454	52	36	10	3	0	3	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0003	454	40	5	21	1	4	9	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0004	454	15	1	1	13	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0005	454	14	0	0	14	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0006	454	8	0	3	4	1	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0007	454	4	3	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0008	454	3	3	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0009	454	3	3	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0010	454	2	2	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0011	454	2	0	0	2	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0012	454	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0013	454	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	a0014	454	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4B_chr10_80532902_80651560	1/1	a0001	433	121	31	35	26	6	21	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0002	433	95	16	15	50	4	10	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0003	433	30	0	0	28	0	2	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0004	433	26	2	5	18	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0005	433	17	16	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0006	433	6	5	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0007	433	5	5	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0008	433	4	0	2	2	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0009	433	4	3	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0010	433	3	3	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0011	433	3	3	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0012	433	2	1	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560