JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SH2D4B_chr10_80532902_80651560	0/0	a0013	433	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0014	433	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0015	433	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0016	433	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0017	433	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	a0018	433	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D5_chr1_20714731_20737703	1/1	a0001	423	403	97	79	164	15	46	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	a0002	423	4	0	0	4	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	a0003	423	1	1	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	a0004	423	1	0	0	0	1	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	a0005	423	1	0	1	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D6_chr2_85413714_85442029	1/1	a0001	335	399	86	70	176	17	48	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	a0002	335	8	0	0	8	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	a0003	335	4	4	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	a0004	335	3	3	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	a0005	335	1	1	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	a0006	335	1	0	0	1	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	a0007	335	1	0	0	0	1	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	a0008	335	1	0	0	1	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D7_chr15_78087561_78109362	1/1	a0001	451	238	43	49	111	6	27	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0002	451	91	22	14	34	7	14	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0003	451	90	25	14	41	4	6	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0004	451	2	0	0	2	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0005	451	2	0	0	0	0	2	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0006	451	2	2	0	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0007	451	1	0	0	1	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0008	451	1	0	1	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0009	451	1	0	1	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0010	451	1	0	1	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0011	451	1	0	0	0	0	1	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0012	451	1	0	0	0	1	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	a0013	451	1	0	0	1	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH3BGRL2_chr6_79626329_79708655	1/1	a0001	107	347	94	70	131	12	38	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	a0002	107	1	0	0	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL3_chr1_26275086_26286522	1/1	a0001	93	422	96	78	188	16	42	copy fasta	SH3BGRL3	chr1	26275086	26286522
SH3BGRL_chrX_81197102_81303547	1/1	a0001	114	243	69	45	92	9	26	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGR_chr21_39446970_39520504	0/0	a0001	177	159	46	29	55	9	20	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	1/1	a0002	176	135	30	27	51	6	19	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	a0003	177	6	3	2	0	0	1	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	a0004	176	1	0	0	0	1	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	a0005	177	1	1	0	0	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BP1_chr22_37634669_37661117	1/1	a0001	701	335	69	56	165	12	31	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0002	701	33	4	16	6	5	2	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0003	658	17	4	2	8	0	3	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0004	701	14	12	1	0	1	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0005	701	2	0	0	0	0	2	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0006	701	2	2	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0007	701	2	2	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0008	701	2	2	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0009	701	1	0	1	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117