JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SH3BP1_chr22_37634669_37661117	0/0	a0010	701	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0011	701	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0012	658	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	a0013	701	1	1	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP2_chr4_2788085_2846096	1/1	a0001	561	374	92	82	140	14	44	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	a0002	561	2	0	0	0	2	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	a0003	561	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	a0004	561	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP4_chr2_234947017_235060714	1/1	a0001	963	194	45	38	70	12	27	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0002	963	127	26	21	60	1	19	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0003	963	8	4	4	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0004	963	6	5	1	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0005	963	3	3	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0006	963	2	0	0	2	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0007	963	2	2	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0008	963	1	0	0	0	1	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0009	963	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0010	963	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0011	963	1	0	0	1	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0012	963	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	a0013	963	1	0	0	1	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP5L_chr1_248805446_248830915	1/1	a0001	393	411	94	62	198	16	39	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	a0002	393	1	0	0	0	0	1	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5_chr3_15249353_15337586	1/1	a0001	455	358	89	68	147	12	40	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	a0002	455	10	1	4	0	0	5	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	a0003	455	2	2	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	a0004	455	2	0	0	0	0	2	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	a0005	455	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	a0006	455	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	a0007	455	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	a0008	455	1	0	0	0	0	1	copy fasta	SH3BP5	chr3	15249353	15337586
SH3D19_chr4_151115281_151330605	1/1	a0001	1047	213	58	39	86	8	20	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0002	1047	19	18	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0003	1047	11	0	3	8	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0004	691	8	2	1	5	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0005	1047	7	0	0	0	0	7	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0006	1047	6	1	3	0	0	2	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0007	1047	5	5	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0008	1047	4	0	0	4	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0009	1047	3	3	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0010	1047	2	0	1	1	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0011	1047	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0012	1047	1	0	0	0	0	1	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0013	1047	1	0	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	a0014	691	1	0	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D21_chr1_36301368_36326347	1/1	a0001	756	348	80	73	131	16	46	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	a0002	756	18	18	0	0	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	a0003	756	4	0	0	4	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	a0004	756	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	a0005	756	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347