JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SH3D21_chr1_36301368_36326347	0/0	a0006	756	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	a0007	756	1	0	1	0	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	a0008	756	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	a0009	756	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3GL1_chr19_4355370_4405547	1/1	a0001	368	356	92	77	125	16	44	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	a0002	368	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	a0003	368	1	0	0	1	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL2_chr9_17574066_17802124	1/0	a0001	352	258	76	46	93	14	28	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/1	a0002	352	1	0	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	a0003	352	1	0	0	1	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL3_chr15_83442341_83623743	1/1	a0001	347	321	84	56	137	14	28	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	a0002	347	2	2	0	0	0	0	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	a0003	347	1	0	0	1	0	0	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GLB1_chr1_86699576_86753184	1/1	a0001	365	318	90	58	120	10	38	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB2_chr9_129002036_129033331	1/1	a0001	395	422	94	76	187	16	47	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	a0002	395	9	0	0	9	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	a0003	395	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	a0004	395	1	1	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	a0005	395	1	0	0	0	0	1	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	a0006	395	1	1	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	a0007	395	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3KBP1_chrX_19528977_19892600	1/1	a0001	665	199	67	41	63	6	20	copy fasta	SH3KBP1	chrX	19528977	19892600
SH3KBP1_chrX_19528977_19892600	0/0	a0002	665	2	0	0	2	0	0	copy fasta	SH3KBP1	chrX	19528977	19892600
SH3KBP1_chrX_19528977_19892600	0/0	a0003	665	1	0	0	0	1	0	copy fasta	SH3KBP1	chrX	19528977	19892600
SH3KBP1_chrX_19528977_19892600	0/0	a0004	665	1	0	0	1	0	0	copy fasta	SH3KBP1	chrX	19528977	19892600
SH3KBP1_chrX_19528977_19892600	0/0	a0005	665	1	1	0	0	0	0	copy fasta	SH3KBP1	chrX	19528977	19892600
SH3PXD2A_chr10_103589027_103860576	1/1	a0001	1133	215	72	42	68	8	23	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0002	1133	12	0	1	11	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0003	1133	9	0	0	9	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0004	1133	4	3	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0005	1133	2	2	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0006	1133	2	0	0	0	2	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0007	1133	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0008	1133	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0009	1133	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0010	1133	1	0	0	0	0	1	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0011	1133	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	a0012	1133	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2B_chr5_172328499_172459525	1/1	a0001	911	255	79	41	91	10	32	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0002	911	8	8	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0003	911	3	3	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0004	909	3	3	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0005	911	2	2	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0006	911	2	0	0	2	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0007	911	2	1	1	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0008	911	2	0	2	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0009	911	1	0	0	0	0	1	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0010	911	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	a0011	911	1	0	0	0	0	1	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3RF1_chr4_169089259_169275956	1/1	a0001	888	184	79	21	49	9	24	copy fasta	SH3RF1	chr4	169089259	169275956