JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SH3RF1_chr4_169089259_169275956	0/0	a0002	888	23	2	5	7	3	6	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	a0003	888	4	4	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	a0004	888	1	0	0	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	a0005	888	1	0	0	1	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	a0006	888	1	0	0	1	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	a0007	888	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	a0008	888	1	0	0	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF2_chr5_145931578_146068292	0/1	a0001	729	103	33	20	37	4	8	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0002	729	79	14	18	31	5	11	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0003	729	49	1	12	26	3	7	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0004	729	10	8	0	1	0	1	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0005	729	7	7	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	1/0	a0006	729	6	5	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0007	729	3	1	2	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0008	729	1	0	1	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0009	729	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0010	729	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0011	729	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0012	729	1	0	0	0	0	1	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0013	729	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0014	729	1	1	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0015	729	1	1	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0016	729	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0017	491	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0018	729	1	1	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0019	729	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0020	729	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0021	729	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	a0022	729	1	0	1	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF3_chr2_109124205_109509634	0/0	a0001	882	147	69	28	32	1	17	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	a0002	882	18	1	8	5	1	3	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	a0003	882	7	0	0	5	0	2	copy fasta	SH3RF3	chr2	109124205	109509634
SH3TC1_chr4_8194290_8246103	0/1	a0001	1336	169	49	35	67	5	12	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0002	1336	127	13	21	58	13	22	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	1/0	a0003	1336	8	7	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0004	1336	6	3	0	0	0	3	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0005	1336	6	1	5	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0006	1336	5	5	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0007	1336	5	5	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0008	1336	4	1	3	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0009	1336	4	4	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0010	1336	3	0	3	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0011	1336	2	0	0	0	0	2	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0012	1336	2	0	2	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0013	1336	2	0	2	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0014	1336	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0015	1336	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0016	1336	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0017	1336	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0018	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103