Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABI3BP_chr3_100744156_100998421	0/0	a0025	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0026	1786	1	0	0	0	1	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0027	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0028	1786	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0029	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0030	1786	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3_chr17_49205707_49228225	0/1	a0001	366	401	94	67	187	15	37	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	a0002	366	41	2	13	16	1	9	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	a0003	366	1	0	1	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	a0004	366	1	1	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	a0005	366	1	1	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	1/0	a0006	366	1	0	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	a0007	366	1	0	1	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	a0008	366	1	0	0	1	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABITRAM_chr9_108929400_108945954	1/1	a0001	181	450	94	78	221	14	41	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	a0002	181	7	2	2	0	2	1	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	a0003	181	1	0	0	1	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABL1_chr9_130830254_130892675	1/1	a0001	1130	265	85	61	81	8	28	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	a0002	1130	6	3	3	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	a0003	1130	2	0	2	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	a0004	1130	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	a0005	1130	1	0	0	1	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	a0006	1130	1	0	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	a0007	1130	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	a0008	1130	1	0	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL2_chr1_179094330_179234677	1/1	a0001	1182	335	83	55	150	12	33	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	a0002	1182	4	2	2	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	a0003	1182	4	0	0	4	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	a0004	1182	2	0	2	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	a0005	1182	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	a0006	1182	1	0	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	a0007	1182	1	1	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	a0008	1182	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	a0009	1182	1	0	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABLIM1_chr10_114426112_114663275	1/1	a0001	778	238	70	46	87	12	21	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0002	778	5	5	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0003	778	3	3	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0004	778	3	3	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0005	778	2	0	0	0	0	2	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0006	778	1	0	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0007	778	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0008	778	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0009	778	1	0	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	a0010	778	1	0	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM2_chr4_7960327_8163813	1/1	a0001	645	317	89	62	107	13	44	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	a0002	645	2	0	2	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	a0003	645	1	0	0	0	1	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	a0004	645	1	0	0	1	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	a0005	645	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM3_chr5_149136493_149265542	1/1	a0001	683	247	63	38	108	10	26	copy fasta	ABLIM3	chr5	149136493	149265542