JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATPAF1_chr1_46627737_46673364	0/0	a0003	328	2	0	2	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF2_chr17_18013021_18044168	1/1	a0001	289	312	81	71	114	12	32	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	a0002	289	10	0	0	10	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	a0003	289	3	3	0	0	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	a0004	289	2	0	0	2	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	a0005	289	1	0	1	0	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPSCKMT_chr5_10220507_10254888	1/1	a0001	233	205	75	48	36	12	32	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	a0002	233	138	17	15	89	5	12	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	a0003	233	5	0	4	0	1	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	a0004	233	5	5	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	a0005	233	2	0	0	2	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	a0006	233	1	0	1	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	a0007	233	1	1	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	a0008	233	1	0	0	1	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATRAID_chr2_27207041_27222157	0/1	a0001	229	248	55	57	90	16	29	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	1/0	a0002	229	33	25	7	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	a0003	229	17	11	3	0	0	3	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	a0004	229	2	0	1	0	0	1	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	a0005	229	1	1	0	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	a0006	229	1	0	0	0	0	1	copy fasta	ATRAID	chr2	27207041	27222157
ATRIP_chr3_48441737_48472645	1/1	a0001	791	342	68	59	162	16	35	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	a0002	791	11	7	4	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	a0003	791	3	3	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	a0004	791	1	0	1	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	a0005	791	1	1	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	a0006	791	1	1	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	a0007	791	1	0	0	0	0	1	copy fasta	ATRIP	chr3	48441737	48472645
ATRNL1_chr10_115088365_115953999	0/1	a0001	1379	118	61	24	22	4	6	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	1/0	a0002	1379	10	7	2	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRN_chr20_3466018_3656118	1/1	a0001	1429	176	61	44	41	10	18	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0002	1429	13	11	0	0	0	2	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0003	1429	5	0	5	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0004	1429	5	5	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0005	1429	3	3	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0006	1429	3	0	1	0	2	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0007	1429	3	2	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0008	1429	2	2	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0009	1429	2	2	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0010	1429	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0011	1429	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0012	1429	1	0	0	1	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0013	1429	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0014	1429	1	0	0	1	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0015	1429	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0016	1429	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	a0017	1429	1	0	0	1	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRX_chrX_77499880_77791216	1/0	a0001	2492	141	51	15	58	4	12	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/1	a0002	2492	72	2	15	34	7	13	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	a0003	2492	2	0	1	0	0	1	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	a0004	2492	1	0	0	1	0	0	copy fasta	ATRX	chrX	77499880	77791216