JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SH3TC1_chr4_8194290_8246103	0/0	a0019	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0020	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0021	1336	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0022	1336	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0023	1336	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0024	1336	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0025	1336	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0026	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0027	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0028	1222	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0029	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0030	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0031	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0032	1336	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0033	1336	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0034	1336	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0035	1336	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0036	1336	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0037	1336	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0038	1336	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0039	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0040	1336	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0041	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0042	1336	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	a0043	1336	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC2_chr5_148977150_149068062	1/1	a0001	1288	231	53	48	103	8	17	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0002	1288	45	22	8	7	2	6	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0003	1288	33	0	12	14	1	6	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0004	1288	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0005	1288	2	0	1	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0006	1288	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0007	1288	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0008	1288	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0009	1288	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0010	1288	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0011	1288	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0012	1288	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0013	1288	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0014	1288	1	0	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0015	1288	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	a0016	1288	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3YL1_chr2_213144_269032	1/1	a0001	10	360	90	74	138	14	42	copy fasta	SH3YL1	chr2	213144	269032
SHANK1_chr19_50654255_50724802	0/0	a0001	2161	185	75	47	31	10	22	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	1/1	a0002	2161	95	6	15	55	3	14	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0003	2161	20	5	1	9	1	4	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0004	2161	2	0	2	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0005	2161	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0006	2161	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0007	2161	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0008	2161	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802