JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SHANK1_chr19_50654255_50724802	0/0	a0009	2161	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0010	2161	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0011	2161	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0012	2161	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0013	2161	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0014	2161	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0015	2161	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0016	2161	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0017	2161	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	a0018	2161	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHARPIN_chr8_144093637_144108773	1/1	a0001	387	301	89	70	97	9	34	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0002	387	5	0	2	0	2	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0003	387	5	1	2	0	2	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0004	387	4	4	0	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0005	387	4	0	1	0	2	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0006	387	4	0	0	4	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0007	387	2	2	0	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0008	387	2	0	0	2	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0009	387	1	0	0	0	0	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0010	387	1	0	0	0	1	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0011	387	1	0	0	1	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0012	387	1	0	0	0	0	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0013	387	1	0	0	1	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0014	387	1	0	0	1	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	a0015	387	1	0	1	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHBG_chr17_7625135_7638372	1/1	a0001	402	394	86	74	180	14	38	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	a0002	402	28	0	3	21	2	2	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	a0003	402	4	3	1	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	a0004	402	2	0	0	0	0	2	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	a0005	402	2	2	0	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	a0006	402	1	0	0	1	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	a0007	402	1	1	0	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHB_chr9_37910898_38074227	1/1	a0001	509	309	72	61	117	11	46	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0002	509	9	1	3	5	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0003	509	2	0	0	0	1	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0004	509	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0005	509	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0006	509	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0007	509	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0008	509	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0009	509	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0010	509	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	a0011	509	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHC1_chr1_154957298_154975747	1/1	a0001	584	253	79	46	83	10	33	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0002	584	16	12	3	0	0	1	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0003	584	12	0	0	12	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0004	584	2	0	0	2	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0005	584	2	0	0	2	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0006	584	2	0	2	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0007	584	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747