JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SHE_chr1_154474481_154507412	1/1	a0001	495	378	90	70	168	10	38	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	a0002	495	2	0	2	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	a0003	249	2	0	0	2	0	0	copy fasta	SHE	chr1	154474481	154507412
SHFL_chr19_10081317_10098243	1/1	a0001	291	443	92	84	204	14	47	copy fasta	SHFL	chr19	10081317	10098243
SHFL_chr19_10081317_10098243	0/0	a0002	291	1	0	0	0	0	1	copy fasta	SHFL	chr19	10081317	10098243
SHF_chr15_45162214_45192966	0/1	a0001	488	338	91	66	130	10	40	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	1/0	a0002	488	56	1	5	49	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	a0003	488	1	0	0	1	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	a0004	434	1	0	0	1	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	a0005	488	1	0	0	1	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	a0006	488	1	0	1	0	0	0	copy fasta	SHF	chr15	45162214	45192966
SHH_chr7_155794980_155817463	1/1	a0001	462	407	97	74	172	16	46	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	a0002	462	5	0	0	5	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	a0003	462	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	a0004	462	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHISA2_chr13_26039597_26057016	1/1	a0001	295	405	94	63	190	15	41	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	a0002	295	44	0	19	17	3	5	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	a0003	295	2	2	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	a0004	295	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	a0005	295	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	a0006	295	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	a0007	295	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	a0008	295	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA3_chr4_42392488_42407487	1/1	a0001	238	313	72	49	142	13	35	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	a0002	238	103	26	31	30	3	13	copy fasta	SHISA3	chr4	42392488	42407487
SHISA4_chr1_201883898_201897587	0/1	a0001	197	345	71	65	162	13	33	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	1/0	a0002	197	71	19	17	18	4	12	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	a0003	197	1	0	0	0	1	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	a0004	197	1	0	0	0	0	1	copy fasta	SHISA4	chr1	201883898	201897587
SHISA5_chr3_48462876_48509174	1/1	a0001	240	289	82	58	99	10	38	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	a0002	240	1	0	0	1	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA6_chr17_11236213_11569063	1/1	a0001	551	188	83	33	46	8	16	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	a0002	551	2	2	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	a0003	551	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	a0004	551	1	0	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA7_chr19_55423740_55448300	0/0	a0000	0	10	1	5	3	1	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	1/1	a0001	538	359	93	67	141	11	45	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	a0002	538	2	0	0	1	0	1	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	a0003	538	1	0	0	1	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA8_chr22_41904543_41920074	1/0	a0001	397	322	64	65	137	12	43	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	a0002	397	26	24	2	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/1	a0003	397	24	1	5	11	2	4	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	a0004	397	2	0	0	2	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	a0005	397	1	0	0	0	0	1	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	a0006	397	1	1	0	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA9_chr16_12896598_13245416	0/0	a0001	424	211	77	34	67	6	27	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	a0002	424	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	a0003	424	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	a0004	424	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISAL1_chr22_44238665_44317951	1/1	a0001	200	379	92	62	170	17	36	copy fasta	SHISAL1	chr22	44238665	44317951