JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SHISAL1_chr22_44238665_44317951	0/0	a0002	193	1	0	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL2A_chr1_52628168_52662065	1/1	a0001	190	438	95	75	201	16	49	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	a0002	190	3	3	0	0	0	0	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	a0003	190	1	0	1	0	0	0	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	a0004	190	1	0	0	1	0	0	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	a0005	190	1	0	0	0	0	1	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2B_chr5_64685503_64723190	1/1	a0001	160	226	59	51	84	9	21	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	a0002	160	153	26	25	78	5	19	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	a0003	160	11	11	0	0	0	0	copy fasta	SHISAL2B	chr5	64685503	64723190
SHKBP1_chr19_40571873_40596397	1/1	a0001	707	382	91	80	154	16	39	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	a0002	707	3	0	0	3	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	a0003	707	2	0	0	2	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	a0004	239	1	0	0	1	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	a0005	707	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	a0006	707	1	0	0	1	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	a0007	707	1	0	0	0	0	1	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	a0008	707	1	0	0	1	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHLD1_chr20_5745401_5869395	1/1	a0001	205	241	67	44	86	9	33	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	a0002	205	80	25	17	23	4	11	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	a0003	205	2	2	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	a0004	205	2	0	1	0	1	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	a0005	205	1	1	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	a0006	205	1	0	0	1	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	a0007	205	1	1	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD2_chr10_87090206_87196465	1/0	a0001	904	216	49	42	97	4	23	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/1	a0002	904	49	10	17	15	2	4	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0003	904	42	18	9	5	1	9	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0004	904	12	0	0	8	0	4	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0005	904	7	6	1	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0006	904	3	0	2	0	1	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0007	904	2	2	0	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0008	904	2	1	1	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0009	904	2	0	0	2	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0010	904	1	1	0	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0011	904	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0012	904	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0013	904	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	a0014	904	1	1	0	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD3_chr5_65620027_65635928	1/1	a0001	250	351	76	69	147	16	41	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	a0002	250	43	13	9	18	0	3	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	a0003	250	9	9	0	0	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	a0004	250	1	0	0	1	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	a0005	250	1	0	0	1	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	a0006	250	1	0	0	1	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHMT1_chr17_18322873_18368550	1/1	a0001	483	175	36	35	77	5	20	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	a0002	483	41	10	9	15	3	4	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	a0003	483	2	1	0	1	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	a0004	483	1	0	0	1	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	a0005	483	1	1	0	0	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT2_chr12_57224711_57239935	1/0	a0001	504	380	89	70	163	14	43	copy fasta	SHMT2	chr12	57224711	57239935