JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SHPK_chr17_3603240_3641250	0/0	a0012	478	1	1	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0013	478	1	0	0	1	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPRH_chr6_145879807_145969358	1/1	a0001	1683	300	61	53	141	12	31	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0002	1683	17	15	2	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0003	1683	16	0	0	16	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0004	1683	6	0	0	6	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0005	1683	4	4	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0006	1683	2	1	1	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0007	1683	2	0	0	2	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0008	1683	2	0	0	2	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0009	1683	1	0	0	0	0	1	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0010	1683	1	1	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0011	1683	1	0	0	1	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0012	1683	1	0	0	0	0	1	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	a0013	1683	1	0	0	0	0	1	copy fasta	SHPRH	chr6	145879807	145969358
SHQ1_chr3_72744277_72853445	1/1	a0001	577	131	24	26	59	4	16	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0002	577	65	41	11	10	2	1	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0003	577	10	10	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0004	577	3	0	2	0	0	1	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0005	577	3	3	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0006	577	3	3	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0007	577	2	2	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0008	577	2	2	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0009	577	1	1	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0010	577	1	0	1	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	a0011	577	1	0	0	1	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHROOM1_chr5_132817141_132835647	1/1	a0001	852	319	81	55	153	7	21	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0002	852	54	5	7	30	4	8	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0003	852	5	5	0	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0004	852	4	0	0	4	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0005	852	3	0	1	1	0	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0006	852	2	1	0	0	1	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0007	852	2	2	0	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0008	852	1	0	0	0	0	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0009	852	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0010	852	1	0	1	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0011	852	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0012	852	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0013	852	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	a0014	852	1	0	0	0	0	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM2_chrX_9781429_9954443	1/0	a0001	1616	97	6	29	35	9	17	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/1	a0002	1616	55	19	14	18	1	2	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0003	1616	38	9	3	25	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0004	1616	6	6	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0005	1616	4	4	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0006	1612	3	0	0	3	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0007	1616	3	0	0	3	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0008	1612	2	0	0	2	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0009	1616	2	2	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0010	1616	2	2	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443