JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SHROOM2_chrX_9781429_9954443	0/0	a0011	1616	2	1	1	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0012	1616	2	0	2	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0013	56	1	0	0	0	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0014	1616	1	0	1	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0015	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0016	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0017	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0018	217	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0019	406	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0020	1612	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0021	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0022	1616	1	0	0	0	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0023	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0024	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0025	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0026	1191	1	0	0	0	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0027	1616	1	0	0	0	1	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0028	1537	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0029	1616	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0030	1616	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0031	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0032	1616	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0033	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0034	1616	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0035	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0036	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0037	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0038	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0039	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0040	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0041	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0042	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0043	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0044	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0045	1616	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0046	1616	1	0	0	0	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0047	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0048	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0049	1616	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0050	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0051	1616	1	0	1	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	a0052	1616	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM3_chr4_76430229_76788253	0/0	a0001	1996	55	15	9	26	2	3	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0002	1996	45	10	6	20	0	9	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	1/1	a0003	1996	44	3	6	29	1	3	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0004	1996	12	7	3	0	1	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0005	1996	6	0	5	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0006	1996	5	2	3	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0007	1996	5	4	0	0	1	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0008	1996	5	5	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253