JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SHROOM3_chr4_76430229_76788253	0/0	a0009	1996	4	4	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0010	1996	3	1	2	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0011	1996	3	3	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0012	1996	3	3	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0013	1996	3	3	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0014	1996	3	0	0	3	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0015	1996	2	0	0	1	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0016	1996	2	0	0	2	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0017	1996	2	2	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0018	1996	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0019	1996	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0020	1996	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0021	1996	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0022	1996	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0023	1996	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0024	1996	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0025	1996	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0026	1996	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0027	1996	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0028	1996	1	0	0	0	1	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0029	1996	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0030	1996	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0031	1996	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0032	1996	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	a0033	1996	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM4_chrX_50581796_50819194	1/0	a0001	1493	93	22	14	42	5	9	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/1	a0002	1498	24	6	8	3	0	6	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0003	1497	14	10	3	0	0	1	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0004	1498	14	0	0	14	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0005	1493	6	5	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0006	1497	5	5	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0007	1493	3	0	1	2	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0008	1497	2	2	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0009	1497	2	2	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0010	1497	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0011	1498	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0012	657	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0013	1493	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0014	1497	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0015	1493	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0016	1493	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0017	1493	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0018	1493	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0019	1493	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0020	25	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	a0021	25	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHTN1_chr10_116876477_117010187	1/1	a0001	631	291	84	50	127	4	24	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	a0002	265	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SIAE_chr11_124628113_124678739	1/0	a0001	523	220	61	54	65	8	31	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	a0002	523	35	3	0	32	0	0	copy fasta	SIAE	chr11	124628113	124678739