JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIAE_chr11_124628113_124678739	0/0	a0003	523	16	16	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	a0004	523	9	7	0	2	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/1	a0005	523	4	0	2	1	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	a0006	523	2	0	0	1	0	1	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	a0007	523	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	a0008	523	1	0	0	1	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	a0009	523	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	a0010	523	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAH1_chr16_48355531_48390413	1/1	a0001	282	256	80	46	94	12	22	copy fasta	SIAH1	chr16	48355531	48390413
SIAH2_chr3_150736125_150768169	1/1	a0001	324	334	94	52	137	10	39	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	a0002	324	12	2	0	7	0	3	copy fasta	SIAH2	chr3	150736125	150768169
SIAH3_chr13_45772242_45856753	1/1	a0001	269	364	92	80	126	16	48	copy fasta	SIAH3	chr13	45772242	45856753
SIDT1_chr3_113527555_113634575	1/0	a0001	827	248	59	47	104	13	24	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0002	827	15	1	0	13	1	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0003	827	10	0	3	6	0	1	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0004	827	10	9	1	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0005	827	9	9	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0006	827	5	5	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0007	827	4	0	2	0	0	2	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0008	827	2	0	0	2	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0009	827	2	0	0	1	0	1	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0010	827	2	0	0	2	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0011	827	2	2	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0012	827	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0013	827	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0014	827	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0015	827	1	0	1	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0016	827	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0017	827	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0018	827	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	a0019	827	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/1	a0020	827	1	0	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT2_chr11_117173743_117202442	1/1	a0001	832	404	87	72	185	15	43	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0002	832	10	1	5	4	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0003	832	4	2	2	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0004	832	2	0	0	2	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0005	832	2	2	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0006	832	1	1	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0007	832	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0008	832	1	0	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0009	832	1	0	0	0	0	1	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0010	832	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0011	832	1	1	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0012	832	1	0	0	0	1	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	a0013	832	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIGIRR_chr11_400716_419999	0/0	a0000	0	1	0	1	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	a0001	410	215	70	37	82	9	17	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	1/1	a0002	410	8	1	3	0	1	1	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	a0003	339	6	2	1	3	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	a0004	410	6	0	4	0	2	0	copy fasta	SIGIRR	chr11	400716	419999