JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATRX_chrX_77499880_77791216	0/0	a0005	2491	1	0	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	a0006	2492	1	1	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATR_chr3_142444235_142583733	0/0	a0001	2644	162	62	27	56	6	11	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	1/1	a0002	2644	109	6	23	64	5	9	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0003	2644	39	5	10	19	1	4	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0004	2644	3	3	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0005	2644	2	2	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0006	2644	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0007	2644	1	0	0	0	1	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0008	2644	1	0	0	0	1	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0009	2644	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0010	2644	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0011	2644	1	0	0	1	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	a0012	2644	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATXN10_chr22_45666834_45850307	1/1	a0001	475	314	83	44	141	10	34	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	a0002	475	1	0	0	1	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	a0003	475	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN1L_chr16_71840976_71862328	1/1	a0001	689	310	75	62	132	9	30	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	a0002	689	92	0	21	54	3	14	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	a0003	689	8	7	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	a0004	689	3	0	0	0	0	3	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	a0005	689	2	2	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	a0006	689	1	0	0	0	0	1	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	a0007	689	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	a0008	689	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1_chr6_16294112_16766460	0/0	a0001	816	28	8	8	9	1	2	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0002	814	26	5	4	16	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	1/0	a0003	815	16	3	7	0	1	4	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0004	812	15	0	0	14	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0005	812	9	9	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0006	817	8	6	2	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0007	813	7	6	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0008	815	6	0	0	5	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/1	a0009	816	6	3	1	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0010	818	6	5	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0011	815	6	0	0	5	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0012	816	5	0	1	0	0	4	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0013	816	4	0	1	3	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0014	814	3	0	2	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0015	817	3	0	2	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0016	817	3	1	1	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0017	819	3	1	1	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0018	817	2	2	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0019	817	2	0	1	0	1	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0020	813	2	0	0	2	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0021	818	2	0	2	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0022	818	2	2	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0023	816	2	0	0	1	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0024	822	2	2	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0025	812	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460