JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIGIRR_chr11_400716_419999	0/0	a0005	410	3	0	0	2	0	1	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	a0006	410	1	0	0	1	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	a0007	339	1	0	0	0	0	1	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	a0008	410	1	1	0	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGLEC10_chr19_51405020_51422642	1/1	a0001	697	211	14	41	117	10	27	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0002	697	93	48	23	0	7	15	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0003	697	67	24	12	27	1	3	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0004	697	19	3	3	9	0	4	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0005	697	3	0	0	3	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0006	697	3	2	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0007	697	2	0	0	2	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0008	697	2	0	1	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0009	697	2	2	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0010	697	2	0	0	2	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0011	697	2	2	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0012	697	2	0	0	2	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0013	681	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0014	697	1	0	1	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0015	697	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0016	697	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0017	697	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0018	697	1	0	0	0	0	1	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0019	697	1	0	1	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0020	697	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0021	697	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0022	697	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0023	697	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	a0024	697	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC11_chr19_49943985_49966172	1/0	a0001	698	151	24	44	59	9	14	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/1	a0002	698	109	9	12	63	2	22	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0003	698	60	0	2	52	0	6	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0004	148	42	35	3	0	1	3	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0005	698	20	4	11	3	1	1	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0006	698	19	1	0	18	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0007	148	15	13	2	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0008	698	4	0	4	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0009	698	4	4	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0010	698	3	1	0	2	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0011	698	3	0	0	3	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0012	148	3	3	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0013	698	3	0	0	3	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0014	148	2	0	2	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0015	698	2	0	0	0	0	2	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0016	698	2	0	0	2	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0017	148	2	2	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0018	148	1	0	1	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0019	698	1	0	0	0	0	1	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0020	698	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0021	698	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0022	698	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172