JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIGLEC5_chr19_51605960_51635401	0/0	a0019	551	1	0	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0020	551	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0021	551	1	0	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0022	551	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0023	551	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0024	551	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0025	551	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0026	551	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0027	19	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC6_chr19_51512819_51536670	1/1	a0001	453	338	78	51	162	10	35	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0002	453	33	1	3	20	3	6	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0003	453	26	1	18	0	2	5	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0004	453	6	0	1	5	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0005	453	4	0	2	0	0	2	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0006	453	4	4	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0007	453	3	0	0	3	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0008	453	2	0	1	0	1	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0009	453	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	a0010	453	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC7_chr19_51137301_51158526	1/1	a0001	467	392	80	77	172	16	45	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	a0002	467	6	6	0	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	a0003	467	2	2	0	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	a0004	467	1	0	0	1	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	a0005	467	1	0	0	0	0	1	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	a0006	467	1	0	1	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	a0007	467	1	0	0	1	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC8_chr19_51445997_51463454	1/1	a0001	499	293	36	50	152	14	39	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0002	499	79	40	13	24	0	2	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0003	499	54	4	12	29	4	5	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0004	499	12	11	1	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0005	499	3	0	0	3	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0006	499	2	2	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0007	499	2	2	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0008	499	2	0	0	2	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0009	499	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0010	499	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0011	499	1	0	0	1	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0012	499	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	a0013	499	1	0	0	1	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC9_chr19_51119906_51135310	0/0	a0001	463	214	47	31	99	9	28	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	1/1	a0002	463	172	5	46	93	7	19	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0003	463	29	28	1	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0004	463	6	5	1	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0005	463	4	0	0	4	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0006	463	4	4	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0007	463	3	3	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0008	463	2	2	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0009	463	2	2	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0010	463	1	1	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0011	463	1	0	1	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310