JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIGLEC9_chr19_51119906_51135310	0/0	a0012	463	1	0	0	0	0	1	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0013	463	1	1	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0014	463	1	0	0	0	0	1	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	a0015	463	1	0	0	0	0	1	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLECL1_chr19_51246080_51274330	1/1	a0001	197	392	94	64	180	16	36	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	a0002	197	2	2	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	a0003	197	2	0	0	0	0	2	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGMAR1_chr9_34629722_34642787	1/1	a0001	223	313	75	57	123	14	42	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	a0002	223	115	21	19	69	2	4	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	a0003	223	8	2	0	6	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	a0004	223	1	0	0	1	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	a0005	223	1	0	0	1	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIK1_chr21_43409483_43432131	0/0	a0001	783	19	13	0	0	0	6	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	a0002	783	11	9	0	0	0	2	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	a0003	783	1	0	0	0	0	1	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	a0004	783	1	0	0	0	0	1	copy fasta	SIK1	chr21	43409483	43432131
SIK2_chr11_111597449_111735855	1/1	a0001	926	197	85	50	38	10	12	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	a0002	926	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK3_chr11_116838402_117103428	1/1	a0001	1369	278	58	43	141	7	27	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0002	1369	55	4	15	14	5	17	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0003	1369	8	7	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0004	1369	6	5	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0005	1366	4	4	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0006	1369	2	2	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0007	1369	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0008	1369	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0009	1369	1	0	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0010	1369	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0011	1369	1	0	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0012	1369	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0013	1369	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0014	1369	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0015	1369	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0016	1369	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0017	1369	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0018	1369	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	a0019	1369	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIKE1_chr1_114764479_114785685	1/1	a0001	207	351	89	72	126	16	46	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	a0002	207	5	0	0	5	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	a0003	144	1	0	0	1	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	a0004	207	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIL1_chr5_138941724_139203368	1/1	a0001	461	184	52	38	64	4	24	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	a0002	461	6	6	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	a0003	461	3	3	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	a0004	461	2	2	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	a0005	461	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	a0006	461	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	a0007	461	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	a0008	461	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	a0009	461	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368