JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIM1_chr6_100380009_100469921	1/1	a0001	766	237	79	42	78	14	22	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	a0002	766	79	0	12	55	4	8	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	a0003	766	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	a0004	766	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	a0005	766	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	a0006	766	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM2_chr21_36694115_36754917	1/0	a0001	667	346	85	62	159	12	27	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/1	a0002	667	46	1	15	4	5	20	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	a0003	667	6	4	2	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	a0004	667	5	4	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	a0005	667	3	0	1	0	1	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	a0006	667	2	0	0	2	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	a0007	667	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	a0008	667	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIMC1_chr5_176233424_176350989	1/1	a0001	891	276	68	48	122	8	28	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0002	891	58	10	10	31	2	5	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0003	891	7	6	1	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0004	891	4	0	0	4	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0005	891	4	3	1	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0006	891	3	0	0	3	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0007	891	2	0	0	1	0	1	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0008	891	2	0	0	2	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0009	891	1	1	0	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0010	891	1	0	0	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0011	891	1	0	0	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	a0012	891	1	0	0	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIN3A_chr15_75364379_75456690	1/1	a0001	1273	319	70	52	150	12	33	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	a0002	1273	1	0	0	0	0	1	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	a0003	1273	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	a0004	1273	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	a0005	1273	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	a0006	1273	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3B_chr19_16824398_16885349	1/1	a0001	1130	362	89	75	154	12	30	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0002	1130	1	0	0	0	0	1	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0003	1130	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0004	1130	1	0	0	0	0	1	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0005	1130	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0006	1130	1	0	1	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0007	1130	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0008	1130	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0009	1130	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0010	1130	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	a0011	1130	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SINHCAF_chr12_31275584_31331150	0/1	a0001	221	347	75	72	149	14	36	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	a0002	221	1	0	0	1	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	a0003	221	1	1	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SIPA1L1_chr14_71315476_71746209	1/1	a0001	1783	164	50	41	46	9	16	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	a0002	1783	2	0	0	2	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	a0003	1783	2	0	1	0	1	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	a0004	1783	1	1	0	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209