JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIPA1L1_chr14_71315476_71746209	0/0	a0005	1783	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	a0006	1783	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	a0007	1783	1	0	0	0	0	1	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	a0008	1783	1	0	0	0	0	1	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	a0009	1783	1	1	0	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L2_chr1_232392965_232635133	1/0	a0001	1722	127	50	19	34	6	17	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0002	1722	54	31	7	9	0	7	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0003	1722	29	0	3	22	0	4	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0004	1722	17	0	7	8	0	2	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/1	a0005	1722	13	1	10	0	1	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0006	1722	11	0	4	3	2	2	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0007	1722	10	0	1	8	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0008	1722	7	6	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0009	1722	5	0	0	4	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0010	1722	3	0	0	3	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0011	1722	2	0	0	0	2	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0012	1722	2	0	0	2	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0013	1722	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0014	1722	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0015	1722	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0016	1722	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0017	1722	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0018	1722	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0019	1722	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0020	1722	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0021	1722	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0022	1722	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0023	1722	1	0	0	0	1	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	a0024	1722	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L3_chr19_37902208_38213369	1/0	a0001	1781	85	38	17	18	2	9	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/1	a0002	1781	34	15	6	7	2	3	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0003	1781	6	6	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0004	1781	5	1	1	2	0	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0005	1783	4	0	1	2	0	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0006	1781	4	0	0	0	2	2	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0007	1781	3	3	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0008	1781	3	0	0	3	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0009	1781	2	0	0	2	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0010	1781	2	0	1	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0011	1781	2	0	0	2	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0012	1783	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0013	1781	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0014	1781	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0015	1781	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0016	1781	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0017	1781	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0018	1781	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0019	1781	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0020	1781	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0021	1781	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369