JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIPA1L3_chr19_37902208_38213369	0/0	a0022	1781	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0023	1781	1	0	0	0	1	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0024	1781	1	0	0	0	1	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	a0025	1781	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1_chr11_65633101_65655912	1/1	a0001	1042	305	70	61	130	17	25	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0002	1042	78	20	9	40	1	8	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0003	1042	8	0	0	8	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0004	1042	6	5	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0005	1042	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0006	1042	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0007	1042	1	0	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0008	624	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0009	1042	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0010	1042	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0011	1042	1	0	0	0	0	1	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0012	1042	1	1	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	a0013	1042	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIRPA_chr20_1890407_1945592	1/0	a0001	504	206	61	46	67	11	20	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/1	a0002	503	198	30	31	111	7	18	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0003	504	5	4	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0004	504	2	0	0	2	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0005	503	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0006	504	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0007	504	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0008	504	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0009	504	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0010	503	1	1	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	a0011	503	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPB1_chr20_1556385_1625009	0/1	a0001	398	128	52	25	27	4	19	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0002	398	111	14	16	60	1	20	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0003	398	81	4	20	49	3	5	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0004	279	16	6	3	0	4	3	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0005	398	4	3	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0006	398	3	1	0	2	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0007	398	3	0	3	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	1/0	a0008	398	3	1	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0009	398	2	0	0	0	0	2	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0010	398	2	2	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0011	279	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0012	398	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0013	398	1	0	0	0	0	1	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0014	398	1	0	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0015	398	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0016	398	1	0	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0017	398	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0018	398	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0019	398	1	0	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0020	398	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	a0021	398	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB2_chr20_1469578_1496420	0/0	a0001	342	326	72	58	147	8	41	copy fasta	SIRPB2	chr20	1469578	1496420