JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIRT3_chr11_210030_241342	0/0	a0006	399	2	2	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0007	399	1	0	0	1	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0008	399	1	0	0	0	0	1	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0009	399	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0010	399	1	0	0	0	0	1	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0011	399	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT4_chr12_120297321_120318249	0/0	a0000	0	1	0	0	1	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	1/1	a0001	314	370	89	68	151	16	44	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	a0002	314	4	4	0	0	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	a0003	314	3	0	0	3	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	a0004	314	1	1	0	0	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	a0005	314	1	0	0	1	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT5_chr6_13569601_13620158	1/1	a0001	310	369	77	64	178	15	33	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	a0002	310	14	2	9	0	1	2	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	a0003	310	7	7	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	a0004	310	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	a0005	310	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	a0006	310	1	0	0	0	0	1	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	a0007	310	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT6_chr19_4169109_4187563	0/1	a0001	355	321	83	52	129	18	38	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	1/0	a0002	355	83	8	19	45	0	10	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	a0003	355	3	3	0	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	a0004	355	1	0	1	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	a0005	355	1	0	0	1	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	a0006	355	1	0	0	1	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT7_chr17_81906939_81923176	1/1	a0001	400	340	80	58	156	8	36	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	a0002	400	1	1	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	a0003	400	1	1	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIT1_chr9_35644295_35655931	1/1	a0001	196	431	94	74	196	15	50	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	a0002	196	1	1	0	0	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	a0003	196	1	0	0	0	1	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	a0004	196	1	1	0	0	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIVA1_chr14_104748147_104764654	1/1	a0001	175	414	90	84	184	14	40	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	a0002	175	4	4	0	0	0	0	copy fasta	SIVA1	chr14	104748147	104764654
SIX1_chr14_60638421_60654477	1/1	a0001	284	392	80	64	184	14	48	copy fasta	SIX1	chr14	60638421	60654477
SIX2_chr2_45000182_45014452	0/0	a0001	291	436	94	84	200	18	40	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	a0002	291	1	1	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	a0003	291	1	1	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX3_chr2_44936702_44951071	1/1	a0001	332	444	99	79	202	16	46	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	a0002	332	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	a0003	332	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	a0004	332	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	a0005	332	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX4_chr14_60704539_60729351	0/0	a0001	781	200	42	39	81	9	29	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	1/1	a0002	781	136	19	15	81	3	16	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	a0003	781	11	9	2	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	a0004	781	6	0	0	5	0	1	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	a0005	781	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	a0006	781	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	a0007	781	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351