JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATXN1_chr6_16294112_16766460	0/0	a0026	813	1	0	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0027	814	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0028	816	1	0	0	0	1	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0029	809	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0030	812	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0031	818	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0032	817	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0033	817	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0034	818	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0035	820	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0036	822	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0037	805	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	a0038	806	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN2L_chr16_28817999_28842232	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	1/1	a0001	1075	371	76	66	178	12	37	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0002	953	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0003	1075	1	0	1	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0004	1075	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0005	1075	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0006	1045	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0007	1075	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0008	1075	1	0	1	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0009	1071	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0010	1075	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	a0011	1075	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2_chr12_111447214_111604315	0/1	a0001	1154	158	31	23	74	4	25	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0002	1154	76	7	11	55	0	3	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	1/0	a0003	1155	44	33	5	3	0	2	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0004	1151	2	0	0	2	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0005	1152	2	2	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0006	1156	2	2	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0007	1155	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0008	1152	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0009	1154	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0010	1154	1	0	1	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0011	1154	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0012	1155	1	0	1	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0013	1155	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0014	1155	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0015	1159	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0016	1159	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0017	1159	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0018	1159	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0019	1161	1	0	1	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	a0020	1163	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN3L_chrX_13313647_13325053	0/0	a0001	355	222	59	40	109	3	11	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	1/1	a0002	355	77	12	20	20	8	15	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	a0003	355	8	0	0	4	0	4	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	a0004	355	6	4	2	0	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	a0005	349	2	0	0	0	0	2	copy fasta	ATXN3L	chrX	13313647	13325053