JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIX5_chr19_45759785_45774252	0/0	a0001	739	228	27	54	109	9	29	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/1	a0002	739	101	19	19	46	5	11	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	1/0	a0003	739	36	0	6	23	3	3	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	a0004	739	34	32	0	1	0	1	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	a0005	739	9	6	3	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	a0006	739	2	2	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	a0007	739	2	0	2	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	a0008	739	1	0	0	0	1	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	a0009	583	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX6_chr14_60504146_60517850	1/0	a0001	246	278	59	26	155	7	30	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/1	a0002	246	108	6	29	47	9	16	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	a0003	246	3	0	0	3	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	a0004	1	1	0	0	1	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	a0005	246	1	1	0	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	a0006	246	1	0	1	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SI_chr3_164973898_165083496	0/0	a0001	1827	122	24	24	56	6	12	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/1	a0002	1827	53	11	10	21	4	6	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	1/0	a0003	1827	29	7	14	6	0	1	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0004	1827	20	19	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0005	1827	19	9	4	2	0	4	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0006	1827	5	5	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0007	1827	2	1	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0008	1827	2	0	2	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0009	1827	2	0	0	2	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0010	1827	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0011	1827	1	0	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0012	1827	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0013	1827	1	0	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0014	1827	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0015	1827	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0016	1827	1	0	0	0	0	1	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0017	1827	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0018	1827	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0019	1827	1	0	0	1	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0020	1827	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	a0021	1827	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SKA1_chr18_50370046_50399168	0/0	a0001	255	289	83	39	125	12	30	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/1	a0002	255	61	4	17	21	6	12	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	a0003	255	35	5	0	30	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	a0004	255	2	0	0	0	0	2	copy fasta	SKA1	chr18	50370046	50399168
SKA2_chr17_59104857_59160186	1/1	a0001	121	293	82	62	101	12	34	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	a0002	121	1	0	0	1	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA3_chr13_21148595_21181552	1/0	a0001	413	323	85	62	131	9	35	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	a0002	413	39	5	1	22	5	6	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/1	a0003	413	10	0	5	2	0	2	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	a0004	413	2	0	1	0	0	1	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	a0005	413	2	0	2	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	a0006	413	1	0	0	1	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	a0007	413	1	0	1	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKAP1_chr17_48128442_48435214	0/1	a0001	359	177	32	38	85	5	16	copy fasta	SKAP1	chr17	48128442	48435214