JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SKAP1_chr17_48128442_48435214	1/0	a0002	359	112	49	20	29	5	8	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	a0003	359	2	2	0	0	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	a0004	359	1	1	0	0	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP2_chr7_26662068_26869590	1/1	a0001	359	239	40	34	133	10	20	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	a0002	359	39	24	12	1	0	2	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	a0003	359	10	9	1	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	a0004	359	8	7	1	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKIC2_chr6_31954175_31974751	0/1	a0001	1246	224	44	37	102	10	30	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0002	1246	106	5	21	75	2	3	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0003	1246	39	21	8	8	0	2	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0004	1246	33	13	5	9	0	6	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0005	1246	21	4	4	11	1	1	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0006	1246	7	1	1	5	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0007	1246	6	1	3	0	2	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0008	1246	4	3	0	0	1	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0009	1246	3	0	3	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0010	1246	2	0	0	0	2	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0011	1246	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0012	1246	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0013	1246	1	1	0	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0014	1246	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0015	1246	1	0	0	0	0	1	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0016	1246	1	1	0	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0017	1246	1	0	0	0	0	1	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	a0018	1246	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC3_chr5_95458894_95559977	1/0	a0001	1564	237	38	46	117	10	25	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/1	a0002	1564	76	27	11	30	3	4	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0003	1564	7	1	0	0	1	5	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0004	1564	6	6	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0005	1564	3	1	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0006	1564	3	3	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0007	1564	3	0	0	3	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0008	1564	2	0	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0009	1564	2	0	0	0	0	2	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0010	1564	2	0	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0011	1564	2	0	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0012	1564	2	1	1	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0013	1564	1	0	1	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0014	1564	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0015	1564	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0016	1564	1	0	1	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0017	1564	1	1	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0018	1564	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	a0019	1564	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC8_chr15_78278235_78304609	1/1	a0001	305	433	96	74	197	16	48	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	a0002	305	1	0	0	1	0	0	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	a0003	305	1	0	0	1	0	0	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	a0004	305	1	0	0	1	0	0	copy fasta	SKIC8	chr15	78278235	78304609
SKIDA1_chr10_21508475_21530682	0/1	a0001	910	128	59	25	22	9	12	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	1/0	a0002	908	68	5	22	26	3	11	copy fasta	SKIDA1	chr10	21508475	21530682